Experiment: 24hr PHYTO7 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03670 and BPHYT_RS03675 are separated by 239 nucleotides
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
BPHYT_RS03675: BPHYT_RS03675 - porin, at 835,707 to 836,924
_RS03675
Position (kb) 835
836
837 Strain fitness (log2 ratio) -1
0
1
2 at 834.878 kb on + strand, within BPHYT_RS03670 at 834.879 kb on - strand, within BPHYT_RS03670 at 834.936 kb on - strand, within BPHYT_RS03670 at 835.097 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.130 kb on - strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.220 kb on + strand, within BPHYT_RS03670 at 835.221 kb on - strand, within BPHYT_RS03670 at 835.307 kb on + strand, within BPHYT_RS03670 at 835.418 kb on - strand at 835.927 kb on + strand, within BPHYT_RS03675 at 835.972 kb on + strand, within BPHYT_RS03675 at 835.973 kb on - strand, within BPHYT_RS03675 at 835.976 kb on + strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.978 kb on + strand, within BPHYT_RS03675 at 836.083 kb on + strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.098 kb on + strand, within BPHYT_RS03675 at 836.108 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.135 kb on - strand, within BPHYT_RS03675 at 836.350 kb on + strand at 836.421 kb on - strand, within BPHYT_RS03675 at 836.447 kb on - strand, within BPHYT_RS03675 at 836.540 kb on - strand, within BPHYT_RS03675 at 836.582 kb on + strand, within BPHYT_RS03675 at 836.670 kb on + strand, within BPHYT_RS03675 at 836.834 kb on - strand at 836.913 kb on + strand at 837.079 kb on + strand at 837.105 kb on + strand at 837.453 kb on + strand at 837.453 kb on + strand at 837.454 kb on - strand at 837.565 kb on + strand at 837.617 kb on - strand at 837.739 kb on + strand at 837.739 kb on + strand at 837.740 kb on - strand at 837.743 kb on + strand at 837.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 10 remove 834,878 + BPHYT_RS03670 0.60 +0.6 834,879 - BPHYT_RS03670 0.60 +2.3 834,936 - BPHYT_RS03670 0.64 -0.0 835,097 + BPHYT_RS03670 0.75 -0.3 835,129 + BPHYT_RS03670 0.77 -1.2 835,129 + BPHYT_RS03670 0.77 -0.2 835,130 - BPHYT_RS03670 0.77 +0.6 835,170 + BPHYT_RS03670 0.80 -0.1 835,170 + BPHYT_RS03670 0.80 -0.1 835,220 + BPHYT_RS03670 0.83 -1.6 835,221 - BPHYT_RS03670 0.83 -0.1 835,307 + BPHYT_RS03670 0.89 +0.8 835,418 - +0.5 835,927 + BPHYT_RS03675 0.18 +0.3 835,972 + BPHYT_RS03675 0.22 +2.1 835,973 - BPHYT_RS03675 0.22 -0.1 835,976 + BPHYT_RS03675 0.22 -0.9 835,977 - BPHYT_RS03675 0.22 -0.5 835,977 - BPHYT_RS03675 0.22 +0.2 835,978 + BPHYT_RS03675 0.22 +0.3 836,083 + BPHYT_RS03675 0.31 +0.1 836,084 - BPHYT_RS03675 0.31 +1.3 836,084 - BPHYT_RS03675 0.31 -0.6 836,098 + BPHYT_RS03675 0.32 -0.2 836,108 + BPHYT_RS03675 0.33 -0.2 836,132 + BPHYT_RS03675 0.35 +0.2 836,132 + BPHYT_RS03675 0.35 -0.9 836,132 + BPHYT_RS03675 0.35 +1.8 836,132 + BPHYT_RS03675 0.35 -0.3 836,132 + BPHYT_RS03675 0.35 -0.1 836,132 + BPHYT_RS03675 0.35 -0.0 836,133 - BPHYT_RS03675 0.35 +1.0 836,133 - BPHYT_RS03675 0.35 -0.3 836,133 - BPHYT_RS03675 0.35 -0.2 836,135 - BPHYT_RS03675 0.35 -0.7 836,350 + -1.2 836,421 - BPHYT_RS03675 0.59 +0.8 836,447 - BPHYT_RS03675 0.61 -0.4 836,540 - BPHYT_RS03675 0.68 -0.3 836,582 + BPHYT_RS03675 0.72 +0.1 836,670 + BPHYT_RS03675 0.79 +0.5 836,834 - -1.2 836,913 + +0.9 837,079 + -1.7 837,105 + +0.6 837,453 + -0.1 837,453 + +0.2 837,454 - -0.3 837,565 + -0.3 837,617 - -1.5 837,739 + -1.4 837,739 + -0.6 837,740 - -0.1 837,743 + -0.1 837,916 - -0.0
Or see this region's nucleotide sequence