Experiment: 24hr PHYTO7 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01340 and BPHYT_RS01345 are separated by 17 nucleotides BPHYT_RS01345 and BPHYT_RS01350 are separated by 107 nucleotides BPHYT_RS01350 and BPHYT_RS01355 are separated by 7 nucleotides
BPHYT_RS01340: BPHYT_RS01340 - ChrB domain-containing protein, at 306,866 to 307,429
_RS01340
BPHYT_RS01345: BPHYT_RS01345 - endonuclease/exonuclease/phosphatase, at 307,447 to 308,253
_RS01345
BPHYT_RS01350: BPHYT_RS01350 - MFS transporter permease, at 308,361 to 309,623
_RS01350
BPHYT_RS01355: BPHYT_RS01355 - hypothetical protein, at 309,631 to 309,993
_RS01355
Position (kb) 308
309
310 Strain fitness (log2 ratio) -2
-1
0
1
2 at 307.367 kb on + strand, within BPHYT_RS01340 at 307.367 kb on + strand, within BPHYT_RS01340 at 307.427 kb on + strand at 307.427 kb on + strand at 307.467 kb on + strand at 307.468 kb on - strand at 307.471 kb on + strand at 307.471 kb on + strand at 307.471 kb on + strand at 307.472 kb on - strand at 307.472 kb on - strand at 307.472 kb on - strand at 307.978 kb on + strand, within BPHYT_RS01345 at 307.978 kb on + strand, within BPHYT_RS01345 at 307.979 kb on - strand, within BPHYT_RS01345 at 308.137 kb on + strand, within BPHYT_RS01345 at 308.225 kb on - strand at 308.251 kb on + strand at 308.252 kb on - strand at 308.252 kb on - strand at 308.296 kb on + strand at 308.296 kb on + strand at 308.296 kb on + strand at 308.297 kb on - strand at 308.301 kb on + strand at 308.301 kb on + strand at 308.301 kb on + strand at 308.301 kb on + strand at 308.302 kb on - strand at 308.476 kb on - strand at 308.493 kb on - strand, within BPHYT_RS01350 at 308.493 kb on - strand, within BPHYT_RS01350 at 308.514 kb on + strand, within BPHYT_RS01350 at 308.515 kb on + strand, within BPHYT_RS01350 at 308.515 kb on + strand, within BPHYT_RS01350 at 308.598 kb on + strand, within BPHYT_RS01350 at 308.647 kb on - strand, within BPHYT_RS01350 at 309.066 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.192 kb on + strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.193 kb on - strand, within BPHYT_RS01350 at 309.228 kb on + strand, within BPHYT_RS01350 at 309.366 kb on - strand, within BPHYT_RS01350 at 309.366 kb on - strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.387 kb on + strand, within BPHYT_RS01350 at 309.447 kb on - strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.462 kb on + strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.463 kb on - strand, within BPHYT_RS01350 at 309.489 kb on - strand, within BPHYT_RS01350 at 309.696 kb on + strand, within BPHYT_RS01355 at 309.697 kb on - strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.700 kb on + strand, within BPHYT_RS01355 at 309.701 kb on - strand, within BPHYT_RS01355 at 309.701 kb on - strand, within BPHYT_RS01355 at 309.716 kb on + strand, within BPHYT_RS01355 at 309.779 kb on - strand, within BPHYT_RS01355 at 309.826 kb on + strand, within BPHYT_RS01355 at 309.827 kb on - strand, within BPHYT_RS01355 at 309.827 kb on - strand, within BPHYT_RS01355 at 309.831 kb on - strand, within BPHYT_RS01355 at 309.831 kb on - strand, within BPHYT_RS01355 at 309.842 kb on - strand, within BPHYT_RS01355 at 309.842 kb on - strand, within BPHYT_RS01355 at 309.853 kb on + strand, within BPHYT_RS01355 at 309.965 kb on + strand at 309.965 kb on + strand at 309.965 kb on + strand at 309.991 kb on + strand at 310.045 kb on + strand at 310.045 kb on + strand at 310.046 kb on - strand at 310.046 kb on - strand at 310.080 kb on + strand at 310.155 kb on + strand at 310.155 kb on + strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.156 kb on - strand at 310.306 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.353 kb on + strand at 310.374 kb on - strand at 310.374 kb on - strand at 310.400 kb on - strand at 310.435 kb on - strand at 310.465 kb on - strand at 310.465 kb on - strand at 310.525 kb on + strand at 310.525 kb on + strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.526 kb on - strand at 310.529 kb on + strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.530 kb on - strand at 310.554 kb on - strand at 310.560 kb on + strand at 310.560 kb on + strand at 310.561 kb on - strand at 310.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 10 remove 307,367 + BPHYT_RS01340 0.89 -1.2 307,367 + BPHYT_RS01340 0.89 -0.2 307,427 + -2.2 307,427 + -0.2 307,467 + +0.2 307,468 - -1.5 307,471 + -0.7 307,471 + -0.2 307,471 + +0.4 307,472 - -0.8 307,472 - -0.9 307,472 - -0.5 307,978 + BPHYT_RS01345 0.66 -0.0 307,978 + BPHYT_RS01345 0.66 -0.8 307,979 - BPHYT_RS01345 0.66 +0.8 308,137 + BPHYT_RS01345 0.86 +0.4 308,225 - -0.3 308,251 + -0.0 308,252 - +0.0 308,252 - -0.3 308,296 + +1.9 308,296 + -1.2 308,296 + +0.3 308,297 - -0.8 308,301 + -0.1 308,301 + +1.5 308,301 + +1.2 308,301 + -1.0 308,302 - -0.2 308,476 - -0.4 308,493 - BPHYT_RS01350 0.10 -0.4 308,493 - BPHYT_RS01350 0.10 -0.5 308,514 + BPHYT_RS01350 0.12 -2.6 308,515 + BPHYT_RS01350 0.12 -1.2 308,515 + BPHYT_RS01350 0.12 +0.0 308,598 + BPHYT_RS01350 0.19 +0.2 308,647 - BPHYT_RS01350 0.23 -0.3 309,066 + BPHYT_RS01350 0.56 -0.1 309,192 + BPHYT_RS01350 0.66 +0.1 309,192 + BPHYT_RS01350 0.66 +0.3 309,192 + BPHYT_RS01350 0.66 -1.5 309,193 - BPHYT_RS01350 0.66 +1.8 309,193 - BPHYT_RS01350 0.66 -2.5 309,193 - BPHYT_RS01350 0.66 -0.9 309,193 - BPHYT_RS01350 0.66 -2.1 309,228 + BPHYT_RS01350 0.69 -1.5 309,366 - BPHYT_RS01350 0.80 +0.4 309,366 - BPHYT_RS01350 0.80 +0.3 309,387 + BPHYT_RS01350 0.81 -0.5 309,387 + BPHYT_RS01350 0.81 -2.4 309,387 + BPHYT_RS01350 0.81 -0.6 309,447 - BPHYT_RS01350 0.86 +0.3 309,462 + BPHYT_RS01350 0.87 -0.7 309,462 + BPHYT_RS01350 0.87 -0.3 309,462 + BPHYT_RS01350 0.87 -0.5 309,462 + BPHYT_RS01350 0.87 +0.1 309,463 - BPHYT_RS01350 0.87 -0.3 309,463 - BPHYT_RS01350 0.87 -1.0 309,463 - BPHYT_RS01350 0.87 -1.8 309,489 - BPHYT_RS01350 0.89 -1.8 309,696 + BPHYT_RS01355 0.18 -1.0 309,697 - BPHYT_RS01355 0.18 -0.5 309,700 + BPHYT_RS01355 0.19 -1.4 309,700 + BPHYT_RS01355 0.19 +0.1 309,700 + BPHYT_RS01355 0.19 -1.4 309,701 - BPHYT_RS01355 0.19 +0.8 309,701 - BPHYT_RS01355 0.19 -0.6 309,716 + BPHYT_RS01355 0.23 -0.5 309,779 - BPHYT_RS01355 0.41 -0.4 309,826 + BPHYT_RS01355 0.54 -0.2 309,827 - BPHYT_RS01355 0.54 -1.0 309,827 - BPHYT_RS01355 0.54 -0.9 309,831 - BPHYT_RS01355 0.55 +0.6 309,831 - BPHYT_RS01355 0.55 -0.3 309,842 - BPHYT_RS01355 0.58 -1.7 309,842 - BPHYT_RS01355 0.58 +0.3 309,853 + BPHYT_RS01355 0.61 +2.0 309,965 + -2.3 309,965 + -2.6 309,965 + +1.0 309,991 + -0.1 310,045 + -0.0 310,045 + +0.5 310,046 - +1.2 310,046 - +0.4 310,080 + -0.1 310,155 + +0.5 310,155 + -0.7 310,156 - -0.7 310,156 - +0.4 310,156 - +1.1 310,306 + -0.4 310,353 + -0.4 310,353 + +0.2 310,353 + +1.2 310,374 - -0.1 310,374 - -1.2 310,400 - -0.8 310,435 - -0.1 310,465 - -0.7 310,465 - +0.6 310,525 + +0.8 310,525 + -0.1 310,526 - -0.2 310,526 - -0.3 310,526 - +0.9 310,529 + +1.7 310,530 - +0.3 310,530 - -0.1 310,530 - -0.5 310,554 - +0.0 310,560 + +0.7 310,560 + +0.2 310,561 - -0.6 310,561 - +0.2
Or see this region's nucleotide sequence