Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30530

Experiment: 24hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30525 and BPHYT_RS30530 are separated by 272 nucleotidesBPHYT_RS30530 and BPHYT_RS30535 are separated by 113 nucleotides BPHYT_RS30525: BPHYT_RS30525 - nitrate ABC transporter substrate-binding protein, at 2,408,601 to 2,409,596 _RS30525 BPHYT_RS30530: BPHYT_RS30530 - ABC transporter substrate-binding protein, at 2,409,869 to 2,410,882 _RS30530 BPHYT_RS30535: BPHYT_RS30535 - hypothetical protein, at 2,410,996 to 2,411,646 _RS30535 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -2 -1 0 1at 2409.861 kb on + strandat 2410.282 kb on + strand, within BPHYT_RS30530at 2410.341 kb on - strand, within BPHYT_RS30530at 2410.341 kb on - strand, within BPHYT_RS30530at 2410.472 kb on + strand, within BPHYT_RS30530at 2410.472 kb on + strand, within BPHYT_RS30530at 2410.946 kb on - strandat 2411.798 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib only
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2,409,861 + +0.0
2,410,282 + BPHYT_RS30530 0.41 -1.9
2,410,341 - BPHYT_RS30530 0.47 -1.2
2,410,341 - BPHYT_RS30530 0.47 -0.9
2,410,472 + BPHYT_RS30530 0.59 -0.2
2,410,472 + BPHYT_RS30530 0.59 -1.3
2,410,946 - +0.3
2,411,798 - -0.9

Or see this region's nucleotide sequence