Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15965

Experiment: 24hr Phyto Lib only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS15960 and BPHYT_RS15965 are separated by 17 nucleotidesBPHYT_RS15965 and BPHYT_RS15970 overlap by 19 nucleotides BPHYT_RS15960: BPHYT_RS15960 - iron-sulfur cluster binding protein, at 3,622,251 to 3,623,489 _RS15960 BPHYT_RS15965: BPHYT_RS15965 - hypothetical protein, at 3,623,507 to 3,624,091 _RS15965 BPHYT_RS15970: BPHYT_RS15970 - N-acetylmuramoyl-L-alanine amidase, at 3,624,073 to 3,625,653 _RS15970 Position (kb) 3623 3624 3625Strain fitness (log2 ratio) -1 0 1at 3622.601 kb on - strand, within BPHYT_RS15960at 3622.640 kb on + strand, within BPHYT_RS15960at 3622.641 kb on - strand, within BPHYT_RS15960at 3622.696 kb on + strand, within BPHYT_RS15960at 3622.877 kb on + strand, within BPHYT_RS15960at 3622.877 kb on + strand, within BPHYT_RS15960at 3622.877 kb on + strand, within BPHYT_RS15960at 3622.877 kb on + strand, within BPHYT_RS15960at 3622.877 kb on + strand, within BPHYT_RS15960at 3622.878 kb on - strand, within BPHYT_RS15960at 3622.878 kb on - strand, within BPHYT_RS15960at 3622.951 kb on - strand, within BPHYT_RS15960at 3622.957 kb on + strand, within BPHYT_RS15960at 3623.029 kb on + strand, within BPHYT_RS15960at 3623.048 kb on - strand, within BPHYT_RS15960at 3623.176 kb on + strand, within BPHYT_RS15960at 3623.176 kb on + strand, within BPHYT_RS15960at 3623.192 kb on + strand, within BPHYT_RS15960at 3623.260 kb on + strand, within BPHYT_RS15960at 3623.260 kb on + strand, within BPHYT_RS15960

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr Phyto Lib only
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3,622,601 - BPHYT_RS15960 0.28 +0.3
3,622,640 + BPHYT_RS15960 0.31 -0.5
3,622,641 - BPHYT_RS15960 0.31 -0.7
3,622,696 + BPHYT_RS15960 0.36 +0.7
3,622,877 + BPHYT_RS15960 0.51 -0.6
3,622,877 + BPHYT_RS15960 0.51 +0.6
3,622,877 + BPHYT_RS15960 0.51 +0.2
3,622,877 + BPHYT_RS15960 0.51 +0.1
3,622,877 + BPHYT_RS15960 0.51 +0.2
3,622,878 - BPHYT_RS15960 0.51 +0.5
3,622,878 - BPHYT_RS15960 0.51 -0.1
3,622,951 - BPHYT_RS15960 0.56 -0.4
3,622,957 + BPHYT_RS15960 0.57 +0.3
3,623,029 + BPHYT_RS15960 0.63 +0.4
3,623,048 - BPHYT_RS15960 0.64 -0.5
3,623,176 + BPHYT_RS15960 0.75 +0.4
3,623,176 + BPHYT_RS15960 0.75 +1.4
3,623,192 + BPHYT_RS15960 0.76 +0.6
3,623,260 + BPHYT_RS15960 0.81 +0.3
3,623,260 + BPHYT_RS15960 0.81 -0.3

Or see this region's nucleotide sequence