Experiment: 24hr Phyto Lib only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03795 and BPHYT_RS03800 are separated by 82 nucleotides BPHYT_RS03800 and BPHYT_RS03805 overlap by 4 nucleotides
BPHYT_RS03795: BPHYT_RS03795 - 4-hydroxybenzoate transporter, at 855,960 to 857,324
_RS03795
BPHYT_RS03800: BPHYT_RS03800 - homogentisate 1,2-dioxygenase, at 857,407 to 858,705
_RS03800
BPHYT_RS03805: BPHYT_RS03805 - fumarylacetoacetase, at 858,702 to 860,012
_RS03805
Position (kb) 857
858
859 Strain fitness (log2 ratio) -2
-1
0
1
2 at 856.448 kb on + strand, within BPHYT_RS03795 at 856.794 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.097 kb on + strand, within BPHYT_RS03795 at 857.355 kb on + strand at 857.356 kb on - strand at 857.507 kb on - strand at 857.562 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.607 kb on + strand, within BPHYT_RS03800 at 857.608 kb on - strand, within BPHYT_RS03800 at 857.798 kb on - strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.833 kb on + strand, within BPHYT_RS03800 at 857.989 kb on + strand, within BPHYT_RS03800 at 858.094 kb on + strand, within BPHYT_RS03800 at 858.202 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.217 kb on + strand, within BPHYT_RS03800 at 858.218 kb on - strand, within BPHYT_RS03800 at 858.321 kb on + strand, within BPHYT_RS03800 at 858.322 kb on - strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.369 kb on + strand, within BPHYT_RS03800 at 858.484 kb on - strand, within BPHYT_RS03800 at 858.484 kb on - strand, within BPHYT_RS03800 at 858.543 kb on + strand, within BPHYT_RS03800 at 858.544 kb on - strand, within BPHYT_RS03800 at 858.656 kb on - strand at 858.874 kb on + strand, within BPHYT_RS03805 at 858.874 kb on + strand, within BPHYT_RS03805 at 859.287 kb on - strand, within BPHYT_RS03805 at 859.431 kb on - strand, within BPHYT_RS03805 at 859.431 kb on - strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.488 kb on + strand, within BPHYT_RS03805 at 859.489 kb on - strand, within BPHYT_RS03805 at 859.614 kb on + strand, within BPHYT_RS03805
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr Phyto Lib only remove 856,448 + BPHYT_RS03795 0.36 +0.9 856,794 + BPHYT_RS03795 0.61 -0.6 857,097 + BPHYT_RS03795 0.83 -0.1 857,097 + BPHYT_RS03795 0.83 -0.2 857,355 + -0.8 857,356 - -1.5 857,507 - +0.1 857,562 + BPHYT_RS03800 0.12 +0.5 857,607 + BPHYT_RS03800 0.15 +0.8 857,607 + BPHYT_RS03800 0.15 +0.1 857,608 - BPHYT_RS03800 0.15 -0.5 857,798 - BPHYT_RS03800 0.30 -1.5 857,833 + BPHYT_RS03800 0.33 -0.2 857,833 + BPHYT_RS03800 0.33 -0.5 857,989 + BPHYT_RS03800 0.45 +0.1 858,094 + BPHYT_RS03800 0.53 -0.9 858,202 + BPHYT_RS03800 0.61 +2.5 858,217 + BPHYT_RS03800 0.62 +0.2 858,217 + BPHYT_RS03800 0.62 -1.1 858,218 - BPHYT_RS03800 0.62 -1.5 858,321 + BPHYT_RS03800 0.70 -0.2 858,322 - BPHYT_RS03800 0.70 -0.2 858,369 + BPHYT_RS03800 0.74 +0.0 858,369 + BPHYT_RS03800 0.74 -1.2 858,369 + BPHYT_RS03800 0.74 -1.3 858,484 - BPHYT_RS03800 0.83 +1.5 858,484 - BPHYT_RS03800 0.83 -0.3 858,543 + BPHYT_RS03800 0.87 +0.2 858,544 - BPHYT_RS03800 0.88 +1.2 858,656 - -1.5 858,874 + BPHYT_RS03805 0.13 -0.9 858,874 + BPHYT_RS03805 0.13 -0.6 859,287 - BPHYT_RS03805 0.45 -0.4 859,431 - BPHYT_RS03805 0.56 +0.1 859,431 - BPHYT_RS03805 0.56 -1.3 859,488 + BPHYT_RS03805 0.60 -0.1 859,488 + BPHYT_RS03805 0.60 +0.4 859,488 + BPHYT_RS03805 0.60 -2.5 859,488 + BPHYT_RS03805 0.60 -0.5 859,489 - BPHYT_RS03805 0.60 -0.2 859,614 + BPHYT_RS03805 0.70 -0.7
Or see this region's nucleotide sequence