Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16035

Experiment: 36hr Phyto Lib Only

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16030 and BPHYT_RS16035 are separated by 10 nucleotidesBPHYT_RS16035 and BPHYT_RS16040 are separated by 852 nucleotides BPHYT_RS16030: BPHYT_RS16030 - Kynureninase (EC 3.7.1.3) (from data), at 3,636,010 to 3,637,260 _RS16030 BPHYT_RS16035: BPHYT_RS16035 - tryptophan 2,3-dioxygenase, at 3,637,271 to 3,638,203 _RS16035 BPHYT_RS16040: BPHYT_RS16040 - short-chain dehydrogenase, at 3,639,056 to 3,639,793 _RS16040 Position (kb) 3637 3638 3639Strain fitness (log2 ratio) -2 -1 0 1 2at 3636.410 kb on - strand, within BPHYT_RS16030at 3636.449 kb on - strand, within BPHYT_RS16030at 3636.686 kb on - strand, within BPHYT_RS16030at 3636.687 kb on + strand, within BPHYT_RS16030at 3636.687 kb on + strand, within BPHYT_RS16030at 3636.688 kb on - strand, within BPHYT_RS16030at 3636.688 kb on - strand, within BPHYT_RS16030at 3636.692 kb on - strand, within BPHYT_RS16030at 3636.735 kb on + strand, within BPHYT_RS16030at 3636.735 kb on + strand, within BPHYT_RS16030at 3637.172 kb on + strandat 3638.104 kb on + strand, within BPHYT_RS16035at 3638.134 kb on + strandat 3639.061 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only
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3,636,410 - BPHYT_RS16030 0.32 -1.7
3,636,449 - BPHYT_RS16030 0.35 -1.5
3,636,686 - BPHYT_RS16030 0.54 +0.8
3,636,687 + BPHYT_RS16030 0.54 -0.2
3,636,687 + BPHYT_RS16030 0.54 -1.2
3,636,688 - BPHYT_RS16030 0.54 +0.8
3,636,688 - BPHYT_RS16030 0.54 -0.0
3,636,692 - BPHYT_RS16030 0.55 -0.7
3,636,735 + BPHYT_RS16030 0.58 -1.9
3,636,735 + BPHYT_RS16030 0.58 +0.2
3,637,172 + -0.2
3,638,104 + BPHYT_RS16035 0.89 +2.0
3,638,134 + +0.0
3,639,061 + -0.9

Or see this region's nucleotide sequence