Experiment: 36hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14680 and BPHYT_RS14685 are separated by 7 nucleotides BPHYT_RS14685 and BPHYT_RS14690 are separated by 101 nucleotides BPHYT_RS14690 and BPHYT_RS14695 are separated by 24 nucleotides
BPHYT_RS14680: BPHYT_RS14680 - peptidase C39, at 3,344,479 to 3,345,192
_RS14680
BPHYT_RS14685: BPHYT_RS14685 - peptidase C39, at 3,345,200 to 3,346,027
_RS14685
BPHYT_RS14690: BPHYT_RS14690 - hypothetical protein, at 3,346,129 to 3,347,565
_RS14690
BPHYT_RS14695: BPHYT_RS14695 - Fis family transcriptional regulator, at 3,347,590 to 3,349,158
_RS14695
Position (kb) 3346
3347
3348 Strain fitness (log2 ratio) -2
-1
0
1 at 3345.401 kb on + strand, within BPHYT_RS14685 at 3345.722 kb on - strand, within BPHYT_RS14685 at 3345.919 kb on + strand, within BPHYT_RS14685 at 3345.920 kb on - strand, within BPHYT_RS14685 at 3345.993 kb on + strand at 3346.065 kb on + strand at 3346.065 kb on + strand at 3346.066 kb on - strand at 3346.066 kb on - strand at 3346.263 kb on + strand at 3346.263 kb on + strand at 3346.263 kb on + strand at 3346.511 kb on - strand, within BPHYT_RS14690 at 3346.699 kb on + strand, within BPHYT_RS14690 at 3346.699 kb on + strand, within BPHYT_RS14690 at 3346.699 kb on + strand, within BPHYT_RS14690 at 3346.700 kb on - strand, within BPHYT_RS14690 at 3346.700 kb on - strand, within BPHYT_RS14690 at 3346.703 kb on - strand, within BPHYT_RS14690 at 3346.703 kb on - strand, within BPHYT_RS14690 at 3346.861 kb on + strand, within BPHYT_RS14690 at 3346.862 kb on - strand, within BPHYT_RS14690 at 3346.862 kb on - strand, within BPHYT_RS14690 at 3346.862 kb on - strand at 3346.862 kb on - strand, within BPHYT_RS14690 at 3346.862 kb on - strand, within BPHYT_RS14690 at 3346.868 kb on - strand, within BPHYT_RS14690 at 3346.876 kb on - strand, within BPHYT_RS14690 at 3346.972 kb on + strand, within BPHYT_RS14690 at 3346.972 kb on + strand, within BPHYT_RS14690 at 3346.972 kb on + strand, within BPHYT_RS14690 at 3346.972 kb on + strand, within BPHYT_RS14690 at 3346.973 kb on - strand, within BPHYT_RS14690 at 3346.973 kb on - strand, within BPHYT_RS14690 at 3346.973 kb on - strand, within BPHYT_RS14690 at 3346.973 kb on - strand, within BPHYT_RS14690 at 3346.975 kb on + strand, within BPHYT_RS14690 at 3347.174 kb on - strand, within BPHYT_RS14690 at 3347.209 kb on - strand, within BPHYT_RS14690 at 3347.209 kb on - strand, within BPHYT_RS14690 at 3347.212 kb on + strand, within BPHYT_RS14690 at 3347.212 kb on + strand, within BPHYT_RS14690 at 3347.213 kb on - strand, within BPHYT_RS14690 at 3347.213 kb on - strand, within BPHYT_RS14690 at 3347.213 kb on - strand, within BPHYT_RS14690 at 3347.213 kb on - strand, within BPHYT_RS14690 at 3347.238 kb on + strand, within BPHYT_RS14690 at 3347.555 kb on - strand at 3347.797 kb on + strand, within BPHYT_RS14695 at 3347.798 kb on - strand, within BPHYT_RS14695 at 3348.061 kb on + strand, within BPHYT_RS14695 at 3348.062 kb on - strand, within BPHYT_RS14695 at 3348.062 kb on - strand, within BPHYT_RS14695 at 3348.109 kb on + strand, within BPHYT_RS14695 at 3348.410 kb on - strand, within BPHYT_RS14695
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only remove 3,345,401 + BPHYT_RS14685 0.24 -0.4 3,345,722 - BPHYT_RS14685 0.63 +0.7 3,345,919 + BPHYT_RS14685 0.87 +0.1 3,345,920 - BPHYT_RS14685 0.87 -1.0 3,345,993 + -1.5 3,346,065 + +0.2 3,346,065 + -0.7 3,346,066 - +0.4 3,346,066 - -0.0 3,346,263 + -1.4 3,346,263 + -0.4 3,346,263 + -0.9 3,346,511 - BPHYT_RS14690 0.27 -1.0 3,346,699 + BPHYT_RS14690 0.40 -0.2 3,346,699 + BPHYT_RS14690 0.40 +0.4 3,346,699 + BPHYT_RS14690 0.40 -1.4 3,346,700 - BPHYT_RS14690 0.40 -0.5 3,346,700 - BPHYT_RS14690 0.40 +0.2 3,346,703 - BPHYT_RS14690 0.40 -0.5 3,346,703 - BPHYT_RS14690 0.40 -0.3 3,346,861 + BPHYT_RS14690 0.51 -0.7 3,346,862 - BPHYT_RS14690 0.51 -0.8 3,346,862 - BPHYT_RS14690 0.51 -1.6 3,346,862 - +0.6 3,346,862 - BPHYT_RS14690 0.51 -0.5 3,346,862 - BPHYT_RS14690 0.51 +0.1 3,346,868 - BPHYT_RS14690 0.51 +0.1 3,346,876 - BPHYT_RS14690 0.52 +0.6 3,346,972 + BPHYT_RS14690 0.59 -1.9 3,346,972 + BPHYT_RS14690 0.59 +0.3 3,346,972 + BPHYT_RS14690 0.59 +1.0 3,346,972 + BPHYT_RS14690 0.59 -2.4 3,346,973 - BPHYT_RS14690 0.59 -0.0 3,346,973 - BPHYT_RS14690 0.59 -0.3 3,346,973 - BPHYT_RS14690 0.59 +0.2 3,346,973 - BPHYT_RS14690 0.59 -1.0 3,346,975 + BPHYT_RS14690 0.59 +0.1 3,347,174 - BPHYT_RS14690 0.73 -0.9 3,347,209 - BPHYT_RS14690 0.75 +0.0 3,347,209 - BPHYT_RS14690 0.75 -0.5 3,347,212 + BPHYT_RS14690 0.75 -0.5 3,347,212 + BPHYT_RS14690 0.75 -0.0 3,347,213 - BPHYT_RS14690 0.75 -0.3 3,347,213 - BPHYT_RS14690 0.75 -0.2 3,347,213 - BPHYT_RS14690 0.75 -0.1 3,347,213 - BPHYT_RS14690 0.75 -1.4 3,347,238 + BPHYT_RS14690 0.77 -0.2 3,347,555 - +0.6 3,347,797 + BPHYT_RS14695 0.13 +0.5 3,347,798 - BPHYT_RS14695 0.13 -0.9 3,348,061 + BPHYT_RS14695 0.30 -1.3 3,348,062 - BPHYT_RS14695 0.30 -0.3 3,348,062 - BPHYT_RS14695 0.30 -1.0 3,348,109 + BPHYT_RS14695 0.33 -0.6 3,348,410 - BPHYT_RS14695 0.52 +1.3
Or see this region's nucleotide sequence