Experiment: 36hr Phyto Lib Only
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07330 and BPHYT_RS07335 are separated by 38 nucleotides BPHYT_RS07335 and BPHYT_RS07340 are separated by 55 nucleotides BPHYT_RS07340 and BPHYT_RS07345 are separated by 12 nucleotides
BPHYT_RS07330: BPHYT_RS07330 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase, at 1,662,550 to 1,663,470
_RS07330
BPHYT_RS07335: BPHYT_RS07335 - nitrate ABC transporter permease, at 1,663,509 to 1,664,576
_RS07335
BPHYT_RS07340: BPHYT_RS07340 - glyoxalase, at 1,664,632 to 1,665,237
_RS07340
BPHYT_RS07345: BPHYT_RS07345 - nitrate ABC transporter permease, at 1,665,250 to 1,665,993
_RS07345
Position (kb) 1663
1664
1665 Strain fitness (log2 ratio) -2
-1
0
1 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.908 kb on - strand, within BPHYT_RS07330 at 1662.957 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.270 kb on - strand, within BPHYT_RS07330 at 1663.309 kb on + strand, within BPHYT_RS07330 at 1663.737 kb on + strand, within BPHYT_RS07335 at 1664.208 kb on + strand, within BPHYT_RS07335 at 1664.209 kb on - strand, within BPHYT_RS07335 at 1664.314 kb on - strand, within BPHYT_RS07335 at 1664.556 kb on - strand at 1664.891 kb on - strand, within BPHYT_RS07340 at 1664.945 kb on + strand, within BPHYT_RS07340 at 1664.976 kb on + strand, within BPHYT_RS07340
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr Phyto Lib Only remove 1,662,908 - BPHYT_RS07330 0.39 -1.6 1,662,908 - BPHYT_RS07330 0.39 +1.2 1,662,908 - BPHYT_RS07330 0.39 +0.2 1,662,957 - BPHYT_RS07330 0.44 -0.4 1,663,270 - BPHYT_RS07330 0.78 -1.1 1,663,270 - BPHYT_RS07330 0.78 -0.1 1,663,270 - BPHYT_RS07330 0.78 +0.4 1,663,309 + BPHYT_RS07330 0.82 -2.2 1,663,737 + BPHYT_RS07335 0.21 -1.6 1,664,208 + BPHYT_RS07335 0.65 -0.9 1,664,209 - BPHYT_RS07335 0.66 -1.0 1,664,314 - BPHYT_RS07335 0.75 -0.5 1,664,556 - -1.0 1,664,891 - BPHYT_RS07340 0.43 -0.6 1,664,945 + BPHYT_RS07340 0.52 +0.7 1,664,976 + BPHYT_RS07340 0.57 -0.5
Or see this region's nucleotide sequence