Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30015

Experiment: 36hr PHYTO6 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30010 and BPHYT_RS30015 are separated by 531 nucleotidesBPHYT_RS30015 and BPHYT_RS30020 are separated by 195 nucleotides BPHYT_RS30010: BPHYT_RS30010 - cell division protein, at 2,286,915 to 2,288,819 _RS30010 BPHYT_RS30015: BPHYT_RS30015 - 2-nitropropane dioxygenase, at 2,289,351 to 2,290,376 _RS30015 BPHYT_RS30020: BPHYT_RS30020 - arsenic transporter, at 2,290,572 to 2,291,843 _RS30020 Position (kb) 2289 2290 2291Strain fitness (log2 ratio) -2 -1 0 1at 2288.522 kb on - strand, within BPHYT_RS30010at 2288.858 kb on - strandat 2289.019 kb on + strandat 2289.260 kb on - strandat 2290.521 kb on + strandat 2290.521 kb on + strandat 2290.898 kb on + strand, within BPHYT_RS30020at 2290.899 kb on - strand, within BPHYT_RS30020at 2291.325 kb on - strand, within BPHYT_RS30020

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 0.1
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2,288,522 - BPHYT_RS30010 0.84 -0.1
2,288,858 - +0.1
2,289,019 + +0.8
2,289,260 - -0.0
2,290,521 + +0.8
2,290,521 + -2.1
2,290,898 + BPHYT_RS30020 0.26 +0.9
2,290,899 - BPHYT_RS30020 0.26 +1.1
2,291,325 - BPHYT_RS30020 0.59 +0.0

Or see this region's nucleotide sequence