Experiment: 36hr PHYTO6 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23185 and BPHYT_RS23190 overlap by 4 nucleotides BPHYT_RS23190 and BPHYT_RS23195 are separated by 116 nucleotides BPHYT_RS23195 and BPHYT_RS23200 are separated by 319 nucleotides BPHYT_RS23200 and BPHYT_RS23205 are separated by 183 nucleotides
BPHYT_RS23185: BPHYT_RS23185 - MFS transporter, at 767,651 to 768,847
_RS23185
BPHYT_RS23190: BPHYT_RS23190 - MarR family transcriptional regulator, at 768,844 to 769,377
_RS23190
BPHYT_RS23195: BPHYT_RS23195 - cytochrome P460, at 769,494 to 770,513
_RS23195
BPHYT_RS23200: BPHYT_RS23200 - cupin, at 770,833 to 771,249
_RS23200
BPHYT_RS23205: BPHYT_RS23205 - alkylhydroperoxidase, at 771,433 to 772,038
_RS23205
Position (kb) 769
770
771 Strain fitness (log2 ratio) -2
-1
0
1 at 769.039 kb on + strand, within BPHYT_RS23190 at 769.655 kb on + strand, within BPHYT_RS23195 at 769.945 kb on + strand, within BPHYT_RS23195 at 770.203 kb on + strand, within BPHYT_RS23195 at 770.213 kb on - strand, within BPHYT_RS23195 at 770.217 kb on - strand, within BPHYT_RS23195 at 770.291 kb on - strand, within BPHYT_RS23195 at 770.366 kb on - strand, within BPHYT_RS23195 at 770.493 kb on - strand at 770.672 kb on + strand at 771.111 kb on + strand, within BPHYT_RS23200 at 771.113 kb on + strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.114 kb on - strand, within BPHYT_RS23200 at 771.322 kb on + strand at 771.391 kb on - strand at 771.404 kb on + strand at 771.405 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 0.1 remove 769,039 + BPHYT_RS23190 0.37 +1.3 769,655 + BPHYT_RS23195 0.16 -0.8 769,945 + BPHYT_RS23195 0.44 -0.7 770,203 + BPHYT_RS23195 0.70 -0.5 770,213 - BPHYT_RS23195 0.70 -0.2 770,217 - BPHYT_RS23195 0.71 -0.2 770,291 - BPHYT_RS23195 0.78 -0.7 770,366 - BPHYT_RS23195 0.85 -1.1 770,493 - -0.7 770,672 + +0.2 771,111 + BPHYT_RS23200 0.67 -2.0 771,113 + BPHYT_RS23200 0.67 -0.2 771,114 - BPHYT_RS23200 0.67 -0.3 771,114 - BPHYT_RS23200 0.67 +0.1 771,114 - BPHYT_RS23200 0.67 -0.3 771,114 - BPHYT_RS23200 0.67 -0.1 771,322 + -0.1 771,391 - -0.2 771,404 + -0.0 771,405 - -0.5
Or see this region's nucleotide sequence