Experiment: 36hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS24190 and BPHYT_RS24195 are separated by 8 nucleotides BPHYT_RS24195 and BPHYT_RS24200 are separated by 51 nucleotides BPHYT_RS24200 and BPHYT_RS24205 are separated by 57 nucleotides BPHYT_RS24205 and BPHYT_RS24210 are separated by 91 nucleotides
BPHYT_RS24190: BPHYT_RS24190 - porin, at 995,409 to 996,608
_RS24190
BPHYT_RS24195: BPHYT_RS24195 - hypothetical protein, at 996,617 to 996,904
_RS24195
BPHYT_RS24200: BPHYT_RS24200 - 4-oxalocrotonate tautomerase, at 996,956 to 997,141
_RS24200
BPHYT_RS24205: BPHYT_RS24205 - aldolase, at 997,199 to 997,975
_RS24205
BPHYT_RS24210: BPHYT_RS24210 - urea transporter, at 998,067 to 999,011
_RS24210
Position (kb) 997
998 Strain fitness (log2 ratio) -1
0
1 at 996.237 kb on + strand, within BPHYT_RS24190 at 996.237 kb on + strand, within BPHYT_RS24190 at 996.343 kb on - strand, within BPHYT_RS24190 at 996.344 kb on + strand, within BPHYT_RS24190 at 996.344 kb on + strand at 996.349 kb on - strand, within BPHYT_RS24190 at 996.349 kb on - strand, within BPHYT_RS24190 at 996.417 kb on + strand, within BPHYT_RS24190 at 996.418 kb on - strand, within BPHYT_RS24190 at 996.421 kb on - strand, within BPHYT_RS24190 at 996.614 kb on + strand at 996.615 kb on - strand at 996.615 kb on - strand at 997.146 kb on + strand at 997.284 kb on + strand, within BPHYT_RS24205 at 997.284 kb on + strand, within BPHYT_RS24205 at 997.843 kb on - strand, within BPHYT_RS24205 at 998.068 kb on + strand at 998.069 kb on - strand at 998.169 kb on - strand, within BPHYT_RS24210 at 998.816 kb on - strand, within BPHYT_RS24210 at 998.816 kb on - strand, within BPHYT_RS24210
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 10 remove 996,237 + BPHYT_RS24190 0.69 +1.2 996,237 + BPHYT_RS24190 0.69 -1.1 996,343 - BPHYT_RS24190 0.78 -0.0 996,344 + BPHYT_RS24190 0.78 +0.1 996,344 + +0.4 996,349 - BPHYT_RS24190 0.78 +0.3 996,349 - BPHYT_RS24190 0.78 -0.8 996,417 + BPHYT_RS24190 0.84 +0.3 996,418 - BPHYT_RS24190 0.84 +0.9 996,421 - BPHYT_RS24190 0.84 +0.3 996,614 + -0.6 996,615 - -0.4 996,615 - -1.5 997,146 + +0.6 997,284 + BPHYT_RS24205 0.11 +0.6 997,284 + BPHYT_RS24205 0.11 -1.0 997,843 - BPHYT_RS24205 0.83 -0.8 998,068 + -0.7 998,069 - -1.0 998,169 - BPHYT_RS24210 0.11 -0.8 998,816 - BPHYT_RS24210 0.79 -0.7 998,816 - BPHYT_RS24210 0.79 +0.1
Or see this region's nucleotide sequence