Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16170

Experiment: 36hr PHYTO6 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16165 and BPHYT_RS16170 are separated by 1 nucleotidesBPHYT_RS16170 and BPHYT_RS16175 are separated by 18 nucleotides BPHYT_RS16165: BPHYT_RS16165 - multidrug transporter, at 3,667,387 to 3,668,964 _RS16165 BPHYT_RS16170: BPHYT_RS16170 - multidrug efflux RND transporter permease subunit, at 3,668,966 to 3,672,187 _RS16170 BPHYT_RS16175: BPHYT_RS16175 - hemolysin D, at 3,672,206 to 3,673,438 _RS16175 Position (kb) 3668 3669 3670 3671 3672 3673Strain fitness (log2 ratio) -1 0 1 2 3at 3669.052 kb on - strandat 3669.052 kb on - strandat 3670.612 kb on - strand, within BPHYT_RS16170at 3672.418 kb on - strand, within BPHYT_RS16175at 3672.790 kb on + strand, within BPHYT_RS16175at 3672.863 kb on + strand, within BPHYT_RS16175at 3673.147 kb on - strand, within BPHYT_RS16175at 3673.147 kb on - strand, within BPHYT_RS16175

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 10
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3,669,052 - -1.7
3,669,052 - +1.5
3,670,612 - BPHYT_RS16170 0.51 +2.5
3,672,418 - BPHYT_RS16175 0.17 +2.5
3,672,790 + BPHYT_RS16175 0.47 +3.1
3,672,863 + BPHYT_RS16175 0.53 +2.5
3,673,147 - BPHYT_RS16175 0.76 +1.5
3,673,147 - BPHYT_RS16175 0.76 +2.5

Or see this region's nucleotide sequence