Experiment: 36hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00875 and BPHYT_RS00880 are separated by 880 nucleotides BPHYT_RS00880 and BPHYT_RS00885 are separated by 46 nucleotides
BPHYT_RS00875: BPHYT_RS00875 - diguanylate cyclase, at 198,084 to 200,225
_RS00875
BPHYT_RS00880: BPHYT_RS00880 - hypothetical protein, at 201,106 to 202,275
_RS00880
BPHYT_RS00885: BPHYT_RS00885 - chemotaxis protein CheY, at 202,322 to 203,386
_RS00885
Position (kb) 201
202
203 Strain fitness (log2 ratio) -1
0
1 at 200.246 kb on + strand at 200.246 kb on + strand at 200.246 kb on + strand at 200.247 kb on - strand at 200.299 kb on + strand at 200.300 kb on - strand at 200.628 kb on + strand at 200.885 kb on + strand at 200.885 kb on + strand at 200.886 kb on - strand at 200.953 kb on + strand at 200.954 kb on - strand at 201.016 kb on + strand at 201.270 kb on - strand, within BPHYT_RS00880 at 201.270 kb on - strand, within BPHYT_RS00880 at 201.583 kb on + strand, within BPHYT_RS00880 at 201.584 kb on - strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.848 kb on + strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.849 kb on - strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.943 kb on + strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.944 kb on - strand, within BPHYT_RS00880 at 201.952 kb on + strand, within BPHYT_RS00880 at 201.953 kb on - strand, within BPHYT_RS00880 at 202.007 kb on + strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.008 kb on - strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.033 kb on + strand, within BPHYT_RS00880 at 202.034 kb on - strand, within BPHYT_RS00880 at 202.137 kb on - strand, within BPHYT_RS00880 at 202.874 kb on - strand, within BPHYT_RS00885 at 203.234 kb on + strand, within BPHYT_RS00885 at 203.270 kb on + strand, within BPHYT_RS00885
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 10 remove 200,246 + +0.8 200,246 + +0.6 200,246 + +0.2 200,247 - +0.1 200,299 + -1.7 200,300 - -0.9 200,628 + -0.1 200,885 + -0.4 200,885 + +0.6 200,886 - -0.2 200,953 + -0.1 200,954 - -1.2 201,016 + -1.0 201,270 - BPHYT_RS00880 0.14 -0.1 201,270 - BPHYT_RS00880 0.14 -0.4 201,583 + BPHYT_RS00880 0.41 -0.3 201,584 - BPHYT_RS00880 0.41 +0.4 201,848 + BPHYT_RS00880 0.63 -0.1 201,848 + BPHYT_RS00880 0.63 -0.1 201,849 - BPHYT_RS00880 0.64 -0.2 201,849 - BPHYT_RS00880 0.64 +0.4 201,849 - BPHYT_RS00880 0.64 -1.5 201,943 + BPHYT_RS00880 0.72 -0.2 201,943 + BPHYT_RS00880 0.72 +0.1 201,944 - BPHYT_RS00880 0.72 +0.8 201,944 - BPHYT_RS00880 0.72 +0.3 201,944 - BPHYT_RS00880 0.72 +0.3 201,952 + BPHYT_RS00880 0.72 -1.2 201,953 - BPHYT_RS00880 0.72 -0.6 202,007 + BPHYT_RS00880 0.77 +0.5 202,008 - BPHYT_RS00880 0.77 +1.0 202,008 - BPHYT_RS00880 0.77 +1.4 202,033 + BPHYT_RS00880 0.79 +0.4 202,033 + BPHYT_RS00880 0.79 +1.3 202,034 - BPHYT_RS00880 0.79 -0.3 202,137 - BPHYT_RS00880 0.88 -0.1 202,874 - BPHYT_RS00885 0.52 -1.6 203,234 + BPHYT_RS00885 0.86 -1.1 203,270 + BPHYT_RS00885 0.89 -0.3
Or see this region's nucleotide sequence