Experiment: 36hr PHYTO6 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00830 and BPHYT_RS00835 are separated by 10 nucleotides BPHYT_RS00835 and BPHYT_RS00840 are separated by 1 nucleotides
BPHYT_RS00830: BPHYT_RS00830 - DNA primase, at 188,413 to 190,002
_RS00830
BPHYT_RS00835: BPHYT_RS00835 - plasmid stabilization protein, at 190,013 to 190,534
_RS00835
BPHYT_RS00840: BPHYT_RS00840 - DNA polymerase, at 190,536 to 191,585
_RS00840
Position (kb) 190
191 Strain fitness (log2 ratio) -2
-1
0
1
2 at 189.093 kb on - strand, within BPHYT_RS00830 at 189.308 kb on - strand, within BPHYT_RS00830 at 189.376 kb on + strand, within BPHYT_RS00830 at 189.377 kb on - strand, within BPHYT_RS00830 at 189.377 kb on - strand, within BPHYT_RS00830 at 189.377 kb on - strand, within BPHYT_RS00830 at 189.385 kb on + strand, within BPHYT_RS00830 at 189.572 kb on - strand, within BPHYT_RS00830 at 190.038 kb on + strand at 190.038 kb on + strand at 190.039 kb on - strand at 190.376 kb on + strand, within BPHYT_RS00835 at 190.748 kb on + strand, within BPHYT_RS00840 at 190.748 kb on + strand, within BPHYT_RS00840 at 190.749 kb on - strand, within BPHYT_RS00840 at 190.749 kb on - strand, within BPHYT_RS00840 at 190.777 kb on - strand, within BPHYT_RS00840 at 190.777 kb on - strand, within BPHYT_RS00840 at 190.828 kb on + strand, within BPHYT_RS00840 at 190.829 kb on - strand, within BPHYT_RS00840 at 190.924 kb on + strand, within BPHYT_RS00840 at 190.924 kb on + strand, within BPHYT_RS00840 at 190.924 kb on + strand, within BPHYT_RS00840 at 190.924 kb on + strand, within BPHYT_RS00840 at 190.924 kb on + strand, within BPHYT_RS00840 at 190.925 kb on - strand, within BPHYT_RS00840 at 190.925 kb on - strand, within BPHYT_RS00840 at 190.925 kb on - strand, within BPHYT_RS00840 at 191.016 kb on + strand, within BPHYT_RS00840 at 191.017 kb on - strand, within BPHYT_RS00840 at 191.018 kb on + strand, within BPHYT_RS00840 at 191.018 kb on + strand, within BPHYT_RS00840 at 191.018 kb on + strand, within BPHYT_RS00840 at 191.074 kb on + strand, within BPHYT_RS00840 at 191.233 kb on + strand, within BPHYT_RS00840 at 191.234 kb on - strand, within BPHYT_RS00840 at 191.234 kb on - strand, within BPHYT_RS00840 at 191.234 kb on - strand, within BPHYT_RS00840 at 191.237 kb on + strand, within BPHYT_RS00840 at 191.237 kb on + strand at 191.237 kb on + strand, within BPHYT_RS00840 at 191.238 kb on - strand, within BPHYT_RS00840
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 10 remove 189,093 - BPHYT_RS00830 0.43 +0.3 189,308 - BPHYT_RS00830 0.56 -1.4 189,376 + BPHYT_RS00830 0.61 +0.6 189,377 - BPHYT_RS00830 0.61 -0.6 189,377 - BPHYT_RS00830 0.61 -1.3 189,377 - BPHYT_RS00830 0.61 +0.4 189,385 + BPHYT_RS00830 0.61 -0.9 189,572 - BPHYT_RS00830 0.73 +0.6 190,038 + +0.2 190,038 + +0.6 190,039 - +0.6 190,376 + BPHYT_RS00835 0.70 -1.7 190,748 + BPHYT_RS00840 0.20 +0.8 190,748 + BPHYT_RS00840 0.20 -0.3 190,749 - BPHYT_RS00840 0.20 -0.9 190,749 - BPHYT_RS00840 0.20 -0.1 190,777 - BPHYT_RS00840 0.23 -0.9 190,777 - BPHYT_RS00840 0.23 +0.0 190,828 + BPHYT_RS00840 0.28 -0.8 190,829 - BPHYT_RS00840 0.28 -1.0 190,924 + BPHYT_RS00840 0.37 +0.0 190,924 + BPHYT_RS00840 0.37 -0.2 190,924 + BPHYT_RS00840 0.37 -2.2 190,924 + BPHYT_RS00840 0.37 -0.7 190,924 + BPHYT_RS00840 0.37 -0.6 190,925 - BPHYT_RS00840 0.37 -1.1 190,925 - BPHYT_RS00840 0.37 +2.6 190,925 - BPHYT_RS00840 0.37 +1.6 191,016 + BPHYT_RS00840 0.46 -0.2 191,017 - BPHYT_RS00840 0.46 -0.1 191,018 + BPHYT_RS00840 0.46 -0.2 191,018 + BPHYT_RS00840 0.46 -0.2 191,018 + BPHYT_RS00840 0.46 +1.3 191,074 + BPHYT_RS00840 0.51 +0.2 191,233 + BPHYT_RS00840 0.66 -0.8 191,234 - BPHYT_RS00840 0.66 +0.5 191,234 - BPHYT_RS00840 0.66 +0.7 191,234 - BPHYT_RS00840 0.66 +1.4 191,237 + BPHYT_RS00840 0.67 -0.3 191,237 + +0.6 191,237 + BPHYT_RS00840 0.67 -0.4 191,238 - BPHYT_RS00840 0.67 +0.6
Or see this region's nucleotide sequence