Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35445

Experiment: 36hr PHYTO6 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS35440 and BPHYT_RS35445 are separated by 29 nucleotidesBPHYT_RS35445 and BPHYT_RS35450 are separated by 71 nucleotidesBPHYT_RS35450 and BPHYT_RS35455 overlap by 4 nucleotidesBPHYT_RS35455 and BPHYT_RS35460 overlap by 4 nucleotides BPHYT_RS35440: BPHYT_RS35440 - carboxymethylenebutenolidase, at 3,552,328 to 3,553,551 _RS35440 BPHYT_RS35445: BPHYT_RS35445 - 2-aminobenzoate-CoA ligase [EC: 6.2.1.32] (from data), at 3,553,581 to 3,555,221 _RS35445 BPHYT_RS35450: BPHYT_RS35450 - endoribonuclease L-PSP, at 3,555,293 to 3,555,688 _RS35450 BPHYT_RS35455: BPHYT_RS35455 - 4-hydroxybenzoyl-CoA thioesterase, at 3,555,685 to 3,556,128 _RS35455 BPHYT_RS35460: BPHYT_RS35460 - acyl-CoA dehydrogenase, at 3,556,125 to 3,557,333 _RS35460 Position (kb) 3553 3554 3555 3556Strain fitness (log2 ratio) -2 -1 0 1 2at 3552.585 kb on + strand, within BPHYT_RS35440at 3552.586 kb on - strand, within BPHYT_RS35440at 3552.592 kb on - strand, within BPHYT_RS35440at 3552.661 kb on - strand, within BPHYT_RS35440at 3552.755 kb on + strand, within BPHYT_RS35440at 3552.756 kb on - strand, within BPHYT_RS35440at 3552.848 kb on + strand, within BPHYT_RS35440at 3552.848 kb on + strand, within BPHYT_RS35440at 3552.894 kb on - strand, within BPHYT_RS35440at 3552.921 kb on - strand, within BPHYT_RS35440at 3553.385 kb on + strand, within BPHYT_RS35440at 3553.582 kb on + strandat 3553.671 kb on - strandat 3554.472 kb on - strand, within BPHYT_RS35445at 3554.505 kb on + strand, within BPHYT_RS35445at 3554.505 kb on + strand, within BPHYT_RS35445at 3554.506 kb on - strand, within BPHYT_RS35445at 3554.506 kb on - strand, within BPHYT_RS35445at 3554.506 kb on - strand, within BPHYT_RS35445at 3554.903 kb on + strand, within BPHYT_RS35445at 3555.459 kb on + strand, within BPHYT_RS35450at 3555.886 kb on - strand, within BPHYT_RS35455

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
remove
3,552,585 + BPHYT_RS35440 0.21 +0.2
3,552,586 - BPHYT_RS35440 0.21 +0.1
3,552,592 - BPHYT_RS35440 0.22 +2.4
3,552,661 - BPHYT_RS35440 0.27 +0.0
3,552,755 + BPHYT_RS35440 0.35 +0.4
3,552,756 - BPHYT_RS35440 0.35 -0.1
3,552,848 + BPHYT_RS35440 0.42 -0.3
3,552,848 + BPHYT_RS35440 0.42 -1.0
3,552,894 - BPHYT_RS35440 0.46 +1.4
3,552,921 - BPHYT_RS35440 0.48 +0.2
3,553,385 + BPHYT_RS35440 0.86 +0.9
3,553,582 + +0.6
3,553,671 - +0.6
3,554,472 - BPHYT_RS35445 0.54 -0.4
3,554,505 + BPHYT_RS35445 0.56 +0.1
3,554,505 + BPHYT_RS35445 0.56 -0.1
3,554,506 - BPHYT_RS35445 0.56 -0.9
3,554,506 - BPHYT_RS35445 0.56 -0.0
3,554,506 - BPHYT_RS35445 0.56 -2.3
3,554,903 + BPHYT_RS35445 0.81 -2.1
3,555,459 + BPHYT_RS35450 0.42 +0.1
3,555,886 - BPHYT_RS35455 0.45 +1.4

Or see this region's nucleotide sequence