Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30665
Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
| Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO6 MOI 1 |
|---|---|---|---|---|---|
| remove | |||||
| 2,436,895 | + | -0.2 | |||
| 2,437,085 | - | -0.6 | |||
| 2,437,658 | + | BPHYT_RS30665 | 0.50 | -2.7 | |
| 2,437,659 | - | BPHYT_RS30665 | 0.50 | +0.1 | |
| 2,437,892 | + | BPHYT_RS30665 | 0.72 | -2.1 | |
| 2,438,181 | - | +0.2 | |||
| 2,438,844 | + | -1.5 | |||
| 2,438,895 | + | -0.7 | |||
| 2,438,906 | + | +0.7 | |||
| 2,439,176 | + | BPHYT_RS30675 | 0.18 | -1.1 |
Or see this region's nucleotide sequence