Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30345

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30335 and BPHYT_RS30340 are separated by 25 nucleotidesBPHYT_RS30340 and BPHYT_RS30345 are separated by 20 nucleotidesBPHYT_RS30345 and BPHYT_RS30350 are separated by 222 nucleotides BPHYT_RS30335: BPHYT_RS30335 - hypothetical protein, at 2,360,815 to 2,361,213 _RS30335 BPHYT_RS30340: BPHYT_RS30340 - AraC family transcriptional regulator, at 2,361,239 to 2,362,093 _RS30340 BPHYT_RS30345: BPHYT_RS30345 - alanyl-tRNA synthetase, at 2,362,114 to 2,362,827 _RS30345 BPHYT_RS30350: BPHYT_RS30350 - LysR family transcriptional regulator, at 2,363,050 to 2,363,970 _RS30350 Position (kb) 2362 2363Strain fitness (log2 ratio) -2 -1 0 1 2at 2361.460 kb on - strand, within BPHYT_RS30340at 2361.817 kb on - strand, within BPHYT_RS30340at 2362.079 kb on - strandat 2362.347 kb on - strand, within BPHYT_RS30345at 2362.506 kb on - strand, within BPHYT_RS30345at 2362.536 kb on + strand, within BPHYT_RS30345at 2362.857 kb on - strandat 2362.984 kb on - strandat 2363.226 kb on - strand, within BPHYT_RS30350at 2363.395 kb on + strand, within BPHYT_RS30350at 2363.396 kb on - strand, within BPHYT_RS30350

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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2,361,460 - BPHYT_RS30340 0.26 +2.4
2,361,817 - BPHYT_RS30340 0.68 -2.1
2,362,079 - -1.6
2,362,347 - BPHYT_RS30345 0.33 -2.2
2,362,506 - BPHYT_RS30345 0.55 +0.3
2,362,536 + BPHYT_RS30345 0.59 -1.2
2,362,857 - -0.6
2,362,984 - +2.4
2,363,226 - BPHYT_RS30350 0.19 +1.1
2,363,395 + BPHYT_RS30350 0.37 +0.7
2,363,396 - BPHYT_RS30350 0.38 -0.1

Or see this region's nucleotide sequence