Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30345
Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,361,460 | - | BPHYT_RS30340 | 0.26 | +2.4 | |
2,361,817 | - | BPHYT_RS30340 | 0.68 | -2.1 | |
2,362,079 | - | -1.6 | |||
2,362,347 | - | BPHYT_RS30345 | 0.33 | -2.2 | |
2,362,506 | - | BPHYT_RS30345 | 0.55 | +0.3 | |
2,362,536 | + | BPHYT_RS30345 | 0.59 | -1.2 | |
2,362,857 | - | -0.6 | |||
2,362,984 | - | +2.4 | |||
2,363,226 | - | BPHYT_RS30350 | 0.19 | +1.1 | |
2,363,395 | + | BPHYT_RS30350 | 0.37 | +0.7 | |
2,363,396 | - | BPHYT_RS30350 | 0.38 | -0.1 |
Or see this region's nucleotide sequence