Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30310
Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,354,874 | - | BPHYT_RS30300 | 0.86 | -0.5 | |
2,355,314 | - | BPHYT_RS30305 | 0.51 | -0.5 | |
2,355,602 | - | +0.3 | |||
2,355,633 | + | -0.3 | |||
2,355,634 | - | -1.4 | |||
2,355,645 | + | +0.1 | |||
2,356,585 | - | -1.5 | |||
2,356,946 | + | BPHYT_RS30315 | 0.34 | -0.8 | |
2,357,114 | - | BPHYT_RS30315 | 0.53 | -1.0 | |
2,357,114 | - | BPHYT_RS30315 | 0.53 | +0.6 | |
2,357,559 | + | +0.8 |
Or see this region's nucleotide sequence