Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30095

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS30090 and BPHYT_RS30095 are separated by 135 nucleotidesBPHYT_RS30095 and BPHYT_RS30100 are separated by 54 nucleotides BPHYT_RS30090: BPHYT_RS30090 - hypothetical protein, at 2,304,871 to 2,306,454 _RS30090 BPHYT_RS30095: BPHYT_RS30095 - RND transporter, at 2,306,590 to 2,306,925 _RS30095 BPHYT_RS30100: BPHYT_RS30100 - copper oxidase, at 2,306,980 to 2,308,275 _RS30100 Position (kb) 2306 2307Strain fitness (log2 ratio) -2 -1 0 1at 2305.606 kb on + strand, within BPHYT_RS30090at 2305.606 kb on + strand, within BPHYT_RS30090at 2305.607 kb on - strand, within BPHYT_RS30090at 2305.608 kb on + strand, within BPHYT_RS30090at 2305.609 kb on - strand, within BPHYT_RS30090at 2306.046 kb on - strand, within BPHYT_RS30090at 2306.107 kb on - strand, within BPHYT_RS30090at 2306.555 kb on - strandat 2307.005 kb on + strandat 2307.006 kb on - strandat 2307.056 kb on + strandat 2307.770 kb on + strand, within BPHYT_RS30100

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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2,305,606 + BPHYT_RS30090 0.46 +0.5
2,305,606 + BPHYT_RS30090 0.46 +0.6
2,305,607 - BPHYT_RS30090 0.46 +0.1
2,305,608 + BPHYT_RS30090 0.47 -0.3
2,305,609 - BPHYT_RS30090 0.47 +0.0
2,306,046 - BPHYT_RS30090 0.74 -0.7
2,306,107 - BPHYT_RS30090 0.78 -2.2
2,306,555 - +1.3
2,307,005 + -1.2
2,307,006 - -0.5
2,307,056 + +1.2
2,307,770 + BPHYT_RS30100 0.61 -0.7

Or see this region's nucleotide sequence