Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS30095
Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO6 MOI 1 |
---|---|---|---|---|---|
remove | |||||
2,305,606 | + | BPHYT_RS30090 | 0.46 | +0.5 | |
2,305,606 | + | BPHYT_RS30090 | 0.46 | +0.6 | |
2,305,607 | - | BPHYT_RS30090 | 0.46 | +0.1 | |
2,305,608 | + | BPHYT_RS30090 | 0.47 | -0.3 | |
2,305,609 | - | BPHYT_RS30090 | 0.47 | +0.0 | |
2,306,046 | - | BPHYT_RS30090 | 0.74 | -0.7 | |
2,306,107 | - | BPHYT_RS30090 | 0.78 | -2.2 | |
2,306,555 | - | +1.3 | |||
2,307,005 | + | -1.2 | |||
2,307,006 | - | -0.5 | |||
2,307,056 | + | +1.2 | |||
2,307,770 | + | BPHYT_RS30100 | 0.61 | -0.7 |
Or see this region's nucleotide sequence