Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25870

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25860 and BPHYT_RS25865 are separated by 103 nucleotidesBPHYT_RS25865 and BPHYT_RS25870 overlap by 4 nucleotidesBPHYT_RS25870 and BPHYT_RS25875 are separated by 12 nucleotides BPHYT_RS25860: BPHYT_RS25860 - hypothetical protein, at 1,382,237 to 1,383,070 _RS25860 BPHYT_RS25865: BPHYT_RS25865 - hypothetical protein, at 1,383,174 to 1,383,599 _RS25865 BPHYT_RS25870: BPHYT_RS25870 - type III secretion system ATPase, at 1,383,596 to 1,384,924 _RS25870 BPHYT_RS25875: BPHYT_RS25875 - type III secretion protein, at 1,384,937 to 1,387,012 _RS25875 Position (kb) 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1at 1384.676 kb on - strand, within BPHYT_RS25870at 1384.910 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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1,384,676 - BPHYT_RS25870 0.81 -1.9
1,384,910 + -0.6

Or see this region's nucleotide sequence