Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25845

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25840 and BPHYT_RS25845 are separated by 18 nucleotidesBPHYT_RS25845 and BPHYT_RS25850 are separated by 27 nucleotides BPHYT_RS25840: BPHYT_RS25840 - acriflavin resistance protein, at 1,371,664 to 1,374,918 _RS25840 BPHYT_RS25845: BPHYT_RS25845 - RND transporter MFP subunit, at 1,374,937 to 1,376,304 _RS25845 BPHYT_RS25850: BPHYT_RS25850 - RND transporter, at 1,376,332 to 1,377,819 _RS25850 Position (kb) 1374 1375 1376 1377Strain fitness (log2 ratio) -1 0 1at 1374.228 kb on + strand, within BPHYT_RS25840at 1374.335 kb on + strand, within BPHYT_RS25840at 1375.382 kb on - strand, within BPHYT_RS25845

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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1,374,228 + BPHYT_RS25840 0.79 -0.5
1,374,335 + BPHYT_RS25840 0.82 -0.3
1,375,382 - BPHYT_RS25845 0.33 -1.0

Or see this region's nucleotide sequence