Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23590 and BPHYT_RS23595 are separated by 395 nucleotides BPHYT_RS23595 and BPHYT_RS23600 are separated by 250 nucleotides BPHYT_RS23600 and BPHYT_RS23605 are separated by 73 nucleotides BPHYT_RS23605 and BPHYT_RS23610 are separated by 45 nucleotides
BPHYT_RS23590: BPHYT_RS23590 - hypothetical protein, at 866,359 to 867,585
_RS23590
BPHYT_RS23595: BPHYT_RS23595 - hypothetical protein, at 867,981 to 868,166
_RS23595
BPHYT_RS23600: BPHYT_RS23600 - hypothetical protein, at 868,417 to 868,695
_RS23600
BPHYT_RS23605: BPHYT_RS23605 - hypothetical protein, at 868,769 to 869,050
_RS23605
BPHYT_RS23610: BPHYT_RS23610 - alpha/beta hydrolase, at 869,096 to 870,091
_RS23610
Position (kb) 868
869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 867.431 kb on - strand, within BPHYT_RS23590 at 867.431 kb on - strand, within BPHYT_RS23590 at 867.552 kb on - strand at 867.559 kb on + strand at 867.560 kb on - strand at 867.681 kb on + strand at 867.681 kb on + strand at 868.332 kb on + strand at 868.332 kb on + strand at 868.436 kb on + strand at 868.627 kb on + strand, within BPHYT_RS23600 at 868.640 kb on - strand, within BPHYT_RS23600 at 868.642 kb on + strand, within BPHYT_RS23600 at 868.682 kb on - strand at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.868 kb on + strand, within BPHYT_RS23605 at 868.869 kb on - strand, within BPHYT_RS23605 at 869.097 kb on + strand at 869.172 kb on + strand at 869.172 kb on + strand at 869.173 kb on - strand at 869.303 kb on + strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610 at 869.423 kb on - strand, within BPHYT_RS23610
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1 remove 867,431 - BPHYT_RS23590 0.87 -0.9 867,431 - BPHYT_RS23590 0.87 -1.9 867,552 - +1.0 867,559 + +1.8 867,560 - -1.9 867,681 + -1.1 867,681 + -2.4 868,332 + +0.6 868,332 + -2.0 868,436 + -0.6 868,627 + BPHYT_RS23600 0.75 -3.1 868,640 - BPHYT_RS23600 0.80 +0.3 868,642 + BPHYT_RS23600 0.81 -1.8 868,682 - -0.4 868,868 + BPHYT_RS23605 0.35 +0.5 868,868 + BPHYT_RS23605 0.35 -0.8 868,868 + BPHYT_RS23605 0.35 +1.1 868,868 + BPHYT_RS23605 0.35 -0.2 868,869 - BPHYT_RS23605 0.35 -0.3 869,097 + -0.2 869,172 + +0.1 869,172 + +0.5 869,173 - -0.1 869,303 + BPHYT_RS23610 0.21 +0.4 869,423 - BPHYT_RS23610 0.33 -0.2 869,423 - BPHYT_RS23610 0.33 -0.6
Or see this region's nucleotide sequence