Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19475

Experiment: 36hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO6 MOI 1
4,381,763	-		BPHYT_RS19470	0.23	+1.9
4,381,763	-		BPHYT_RS19470	0.23	+0.4
4,381,816	-		BPHYT_RS19470	0.29	-0.5
4,382,049	+		BPHYT_RS19470	0.53	+0.7
4,382,049	+		BPHYT_RS19470	0.53	+2.1
4,382,049	+		BPHYT_RS19470	0.53	+0.1
4,382,050	-		BPHYT_RS19470	0.53	+1.2
4,382,157	+		BPHYT_RS19470	0.64	-0.7
4,382,157	+		BPHYT_RS19470	0.64	+1.0
4,382,157	+		BPHYT_RS19470	0.64	+0.0
4,382,157	+		BPHYT_RS19470	0.64	+0.9
4,382,158	-		BPHYT_RS19470	0.64	-0.3
4,382,158	-		BPHYT_RS19470	0.64	-0.5
4,382,158	-		BPHYT_RS19470	0.64	-0.5
4,382,158	-		BPHYT_RS19470	0.64	-0.4
4,382,158	-		BPHYT_RS19470	0.64	-0.5
4,382,196	+		BPHYT_RS19470	0.68	-0.2
4,382,196	+				+0.4
4,382,196	+		BPHYT_RS19470	0.68	-0.2
4,382,323	-		BPHYT_RS19470	0.81	-0.0
4,382,323	-		BPHYT_RS19470	0.81	-0.1
4,382,442	+				-0.6
4,382,443	-				+1.6
4,382,490	+				+0.6
4,382,491	-				-0.7
4,383,032	+		BPHYT_RS19475	0.59	-0.2
4,383,206	+		BPHYT_RS19475	0.79	-0.7
4,383,321	-				-1.3
4,383,402	+				-1.0
4,383,561	+				+0.4
4,383,583	+				-0.3
4,383,584	-				-1.4
4,383,584	-				-1.3
4,383,658	+				+0.1
4,383,659	-				+2.2
4,383,659	-				-0.2
4,383,661	+				+0.6
4,383,662	-				-0.8
4,383,709	+		BPHYT_RS19480	0.10	+0.2
4,383,709	+		BPHYT_RS19480	0.10	+0.7
4,383,709	+		BPHYT_RS19480	0.10	+0.1
4,383,710	-		BPHYT_RS19480	0.11	+1.3
4,383,710	-		BPHYT_RS19480	0.11	-1.0
4,383,710	-		BPHYT_RS19480	0.11	-1.4
4,383,745	+		BPHYT_RS19480	0.13	-0.9
4,383,745	+		BPHYT_RS19480	0.13	+1.3
4,383,745	+		BPHYT_RS19480	0.13	-1.4
4,383,745	+		BPHYT_RS19480	0.13	-1.0
4,383,746	-		BPHYT_RS19480	0.13	-1.0
4,383,746	-		BPHYT_RS19480	0.13	-0.7
4,383,757	+		BPHYT_RS19480	0.14	+0.1
4,383,757	+		BPHYT_RS19480	0.14	-1.0
4,383,757	+		BPHYT_RS19480	0.14	-1.1
4,383,758	-		BPHYT_RS19480	0.14	+2.4
4,383,841	+		BPHYT_RS19480	0.21	-0.1
4,383,842	-		BPHYT_RS19480	0.21	-0.8
4,383,842	-		BPHYT_RS19480	0.21	-0.9
4,383,842	-		BPHYT_RS19480	0.21	-0.6
4,383,842	-		BPHYT_RS19480	0.21	+0.2
4,383,907	+		BPHYT_RS19480	0.27	+2.0
4,383,908	-		BPHYT_RS19480	0.27	+0.0
4,383,949	+		BPHYT_RS19480	0.30	-0.6
4,384,261	+		BPHYT_RS19480	0.56	-0.1
4,384,261	+		BPHYT_RS19480	0.56	-0.5
4,384,279	+		BPHYT_RS19480	0.57	+1.5
4,384,280	-		BPHYT_RS19480	0.57	-3.8
4,384,280	-		BPHYT_RS19480	0.57	-1.1
4,384,345	+		BPHYT_RS19480	0.63	-0.9
4,384,345	+		BPHYT_RS19480	0.63	-0.1
4,384,346	-		BPHYT_RS19480	0.63	+0.0
4,384,346	-		BPHYT_RS19480	0.63	+0.9
4,384,351	+		BPHYT_RS19480	0.63	-0.9