Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14165

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14160 and BPHYT_RS14165 are separated by 82 nucleotidesBPHYT_RS14165 and BPHYT_RS14170 are separated by 188 nucleotides BPHYT_RS14160: BPHYT_RS14160 - dihydropteroate synthase, at 3,233,958 to 3,234,857 _RS14160 BPHYT_RS14165: BPHYT_RS14165 - ATP-dependent metalloprotease, at 3,234,940 to 3,236,829 _RS14165 BPHYT_RS14170: BPHYT_RS14170 - ribosomal RNA large subunit methyltransferase E, at 3,237,018 to 3,237,680 _RS14170 Position (kb) 3234 3235 3236 3237Strain fitness (log2 ratio) -1 0 1at 3234.863 kb on - strandat 3236.892 kb on - strandat 3237.020 kb on - strandat 3237.717 kb on - strandat 3237.724 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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3,234,863 - -0.5
3,236,892 - -1.3
3,237,020 - +0.1
3,237,717 - -1.7
3,237,724 - +0.2

Or see this region's nucleotide sequence