Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12640

Experiment: 36hr PHYTO6 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO6 MOI 1
2,882,756	-				+1.0
2,883,137	-		BPHYT_RS12635	0.55	+0.2
2,883,137	-		BPHYT_RS12635	0.55	+2.8
2,883,313	+		BPHYT_RS12635	0.82	+2.3
2,883,314	-		BPHYT_RS12635	0.82	+0.3
2,883,416	-				+1.2
2,883,416	-				+0.8
2,883,416	-				-0.2
2,883,460	+				-0.2
2,883,460	+				-0.4
2,883,461	-				+1.1
2,883,501	-				-0.2
2,883,695	+		BPHYT_RS12640	0.17	-1.1
2,883,801	-		BPHYT_RS12640	0.29	+0.4
2,883,892	+		BPHYT_RS12640	0.40	-0.3
2,883,893	-		BPHYT_RS12640	0.41	+0.9
2,883,893	-		BPHYT_RS12640	0.41	-0.0
2,883,897	-		BPHYT_RS12640	0.41	+0.3
2,884,013	-		BPHYT_RS12640	0.55	+0.6
2,884,013	-		BPHYT_RS12640	0.55	-0.6
2,884,016	+		BPHYT_RS12640	0.55	+2.3
2,884,017	-		BPHYT_RS12640	0.55	-0.0
2,884,017	-		BPHYT_RS12640	0.55	+0.4
2,884,017	-		BPHYT_RS12640	0.55	-0.2
2,884,017	-		BPHYT_RS12640	0.55	-0.2
2,884,017	-		BPHYT_RS12640	0.55	+0.7
2,884,017	-		BPHYT_RS12640	0.55	+0.9
2,884,017	-		BPHYT_RS12640	0.55	+1.1
2,884,017	-		BPHYT_RS12640	0.55	+0.4
2,884,017	-		BPHYT_RS12640	0.55	+1.5
2,884,164	+		BPHYT_RS12640	0.73	+2.3
2,884,164	+		BPHYT_RS12640	0.73	+1.9
2,884,215	-		BPHYT_RS12640	0.79	-0.4
2,884,215	-		BPHYT_RS12640	0.79	+1.2
2,884,418	-				-0.3
2,884,430	+				-0.9
2,884,446	+				-0.6
2,884,447	-				+1.8
2,884,447	-				+2.6
2,884,447	-				+1.0
2,884,447	-				+1.2
2,884,507	+				+1.3
2,884,708	-		BPHYT_RS12645	0.23	-0.4
2,884,708	-		BPHYT_RS12645	0.23	+1.3
2,884,745	-		BPHYT_RS12645	0.27	+1.5
2,884,907	-				+1.3
2,884,907	-		BPHYT_RS12645	0.45	-2.0
2,884,961	+		BPHYT_RS12645	0.51	-0.0
2,885,144	-		BPHYT_RS12645	0.72	-0.8
2,885,158	+		BPHYT_RS12645	0.74	-0.0
2,885,158	+		BPHYT_RS12645	0.74	-1.6
2,885,159	-		BPHYT_RS12645	0.74	-0.7