Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09895

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09890 and BPHYT_RS09895 are separated by 26 nucleotidesBPHYT_RS09895 and BPHYT_RS09900 are separated by 117 nucleotides BPHYT_RS09890: BPHYT_RS09890 - choline dehydrogenase, at 2,250,694 to 2,252,355 _RS09890 BPHYT_RS09895: BPHYT_RS09895 - LysR family transcriptional regulator, at 2,252,382 to 2,253,317 _RS09895 BPHYT_RS09900: BPHYT_RS09900 - aldehyde dehydrogenase, at 2,253,435 to 2,254,913 _RS09900 Position (kb) 2252 2253 2254Strain fitness (log2 ratio) -1 0 1at 2251.592 kb on - strand, within BPHYT_RS09890at 2252.107 kb on + strand, within BPHYT_RS09890at 2252.242 kb on - strandat 2252.728 kb on + strand, within BPHYT_RS09895at 2253.468 kb on - strandat 2253.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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2,251,592 - BPHYT_RS09890 0.54 +0.7
2,252,107 + BPHYT_RS09890 0.85 -0.3
2,252,242 - -0.4
2,252,728 + BPHYT_RS09895 0.37 -1.3
2,253,468 - +0.0
2,253,505 - -0.3

Or see this region's nucleotide sequence