Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08365

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08360 and BPHYT_RS08365 are separated by 326 nucleotidesBPHYT_RS08365 and BPHYT_RS08370 are separated by 502 nucleotides BPHYT_RS08360: BPHYT_RS08360 - LysR family transcriptional regulator, at 1,915,321 to 1,916,211 _RS08360 BPHYT_RS08365: BPHYT_RS08365 - 3-oxoacyl-ACP reductase, at 1,916,538 to 1,917,248 _RS08365 BPHYT_RS08370: BPHYT_RS08370 - glyoxalase, at 1,917,751 to 1,918,362 _RS08370 Position (kb) 1916 1917 1918Strain fitness (log2 ratio) -1 0 1at 1916.085 kb on + strand, within BPHYT_RS08360at 1916.645 kb on + strand, within BPHYT_RS08365at 1917.161 kb on - strand, within BPHYT_RS08365at 1917.575 kb on - strandat 1917.641 kb on - strandat 1918.105 kb on + strand, within BPHYT_RS08370

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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1,916,085 + BPHYT_RS08360 0.86 -0.8
1,916,645 + BPHYT_RS08365 0.15 -0.6
1,917,161 - BPHYT_RS08365 0.88 -0.6
1,917,575 - -0.3
1,917,641 - -1.0
1,918,105 + BPHYT_RS08370 0.58 -1.7

Or see this region's nucleotide sequence