Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07955 and BPHYT_RS07960 are separated by 203 nucleotides BPHYT_RS07960 and BPHYT_RS07965 are separated by 27 nucleotides BPHYT_RS07965 and BPHYT_RS07970 are separated by 227 nucleotides
BPHYT_RS07955: BPHYT_RS07955 - transcriptional regulator, at 1,810,906 to 1,811,379
_RS07955
BPHYT_RS07960: BPHYT_RS07960 - hypothetical protein, at 1,811,583 to 1,811,792
_RS07960
BPHYT_RS07965: BPHYT_RS07965 - hypothetical protein, at 1,811,820 to 1,814,375
_RS07965
BPHYT_RS07970: BPHYT_RS07970 - exodeoxyribonuclease V subunit gamma, at 1,814,603 to 1,817,977
_RS07970
Position (kb)
1811
1812
1813
1814
1815 Strain fitness (log2 ratio)
-1
0
1 at 1810.822 kb on - strand at 1810.822 kb on - strand at 1810.853 kb on - strand at 1810.892 kb on - strand at 1810.893 kb on + strand at 1811.339 kb on - strand at 1811.377 kb on + strand at 1811.378 kb on - strand at 1811.673 kb on + strand, within BPHYT_RS07960 at 1811.675 kb on + strand, within BPHYT_RS07960 at 1811.791 kb on - strand at 1812.088 kb on - strand, within BPHYT_RS07965 at 1812.692 kb on - strand, within BPHYT_RS07965 at 1812.899 kb on - strand, within BPHYT_RS07965 at 1812.920 kb on - strand, within BPHYT_RS07965 at 1812.920 kb on - strand, within BPHYT_RS07965 at 1812.945 kb on + strand, within BPHYT_RS07965 at 1813.239 kb on + strand, within BPHYT_RS07965 at 1813.375 kb on + strand, within BPHYT_RS07965 at 1813.648 kb on - strand, within BPHYT_RS07965 at 1813.915 kb on + strand, within BPHYT_RS07965 at 1813.921 kb on + strand, within BPHYT_RS07965 at 1813.921 kb on + strand, within BPHYT_RS07965 at 1813.921 kb on + strand, within BPHYT_RS07965 at 1813.922 kb on - strand, within BPHYT_RS07965 at 1813.922 kb on - strand, within BPHYT_RS07965 at 1814.011 kb on - strand, within BPHYT_RS07965 at 1814.011 kb on - strand, within BPHYT_RS07965 at 1814.048 kb on - strand, within BPHYT_RS07965 at 1814.185 kb on + strand at 1814.205 kb on - strand at 1814.283 kb on + strand at 1814.533 kb on + strand at 1814.533 kb on + strand at 1814.533 kb on + strand at 1814.534 kb on - strand at 1814.534 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1 remove 1,810,822 - -0.1 1,810,822 - +0.0 1,810,853 - +1.1 1,810,892 - -0.7 1,810,893 + -0.7 1,811,339 - +0.8 1,811,377 + -0.4 1,811,378 - -0.4 1,811,673 + BPHYT_RS07960 0.43 +0.7 1,811,675 + BPHYT_RS07960 0.44 -1.1 1,811,791 - +0.9 1,812,088 - BPHYT_RS07965 0.10 -0.4 1,812,692 - BPHYT_RS07965 0.34 -0.6 1,812,899 - BPHYT_RS07965 0.42 -0.5 1,812,920 - BPHYT_RS07965 0.43 +0.3 1,812,920 - BPHYT_RS07965 0.43 -1.7 1,812,945 + BPHYT_RS07965 0.44 -0.3 1,813,239 + BPHYT_RS07965 0.56 +0.7 1,813,375 + BPHYT_RS07965 0.61 +0.5 1,813,648 - BPHYT_RS07965 0.72 -1.5 1,813,915 + BPHYT_RS07965 0.82 -1.2 1,813,921 + BPHYT_RS07965 0.82 -0.7 1,813,921 + BPHYT_RS07965 0.82 +0.3 1,813,921 + BPHYT_RS07965 0.82 -0.7 1,813,922 - BPHYT_RS07965 0.82 -0.3 1,813,922 - BPHYT_RS07965 0.82 -0.3 1,814,011 - BPHYT_RS07965 0.86 -0.5 1,814,011 - BPHYT_RS07965 0.86 -0.4 1,814,048 - BPHYT_RS07965 0.87 +0.0 1,814,185 + +0.1 1,814,205 - -1.0 1,814,283 + -0.7 1,814,533 + +0.7 1,814,533 + -0.5 1,814,533 + +1.2 1,814,534 - +1.2 1,814,534 - +1.7
Or see this region's nucleotide sequence