Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS05635

Experiment: 36hr PHYTO6 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS05630 and BPHYT_RS05635 are separated by 205 nucleotidesBPHYT_RS05635 and BPHYT_RS05640 overlap by 2 nucleotides BPHYT_RS05630: BPHYT_RS05630 - glutathione S-transferase, at 1,288,989 to 1,289,696 _RS05630 BPHYT_RS05635: BPHYT_RS05635 - hypothetical protein, at 1,289,902 to 1,290,159 _RS05635 BPHYT_RS05640: BPHYT_RS05640 - hypothetical protein, at 1,290,158 to 1,291,231 _RS05640 Position (kb) 1289 1290 1291Strain fitness (log2 ratio) -2 -1 0 1 2at 1288.979 kb on - strandat 1289.274 kb on + strand, within BPHYT_RS05630at 1289.274 kb on + strand, within BPHYT_RS05630at 1289.326 kb on - strand, within BPHYT_RS05630at 1289.419 kb on - strand, within BPHYT_RS05630at 1289.446 kb on - strand, within BPHYT_RS05630at 1289.477 kb on - strand, within BPHYT_RS05630at 1289.477 kb on - strand, within BPHYT_RS05630at 1289.562 kb on - strand, within BPHYT_RS05630at 1289.676 kb on - strandat 1289.682 kb on - strandat 1289.682 kb on - strandat 1289.895 kb on + strandat 1289.955 kb on + strand, within BPHYT_RS05635at 1289.973 kb on + strand, within BPHYT_RS05635at 1289.973 kb on + strand, within BPHYT_RS05635at 1289.973 kb on + strand, within BPHYT_RS05635at 1289.973 kb on + strand, within BPHYT_RS05635at 1290.107 kb on + strand, within BPHYT_RS05635at 1290.117 kb on + strand, within BPHYT_RS05635at 1290.117 kb on + strand, within BPHYT_RS05635at 1290.231 kb on + strandat 1290.239 kb on + strandat 1290.239 kb on + strandat 1290.239 kb on + strandat 1290.393 kb on - strand, within BPHYT_RS05640at 1290.403 kb on + strand, within BPHYT_RS05640at 1290.455 kb on + strand, within BPHYT_RS05640at 1290.466 kb on - strand, within BPHYT_RS05640at 1290.474 kb on + strand, within BPHYT_RS05640at 1290.475 kb on - strand, within BPHYT_RS05640at 1290.475 kb on - strand, within BPHYT_RS05640at 1290.546 kb on - strand, within BPHYT_RS05640at 1290.565 kb on - strand, within BPHYT_RS05640at 1290.584 kb on + strand, within BPHYT_RS05640at 1290.638 kb on + strand, within BPHYT_RS05640at 1290.639 kb on - strand, within BPHYT_RS05640at 1290.642 kb on - strand, within BPHYT_RS05640at 1290.682 kb on + strand, within BPHYT_RS05640at 1290.691 kb on + strand, within BPHYT_RS05640at 1291.069 kb on + strand, within BPHYT_RS05640at 1291.070 kb on - strand, within BPHYT_RS05640at 1291.070 kb on - strand, within BPHYT_RS05640at 1291.070 kb on - strand, within BPHYT_RS05640

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
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1,288,979 - +0.5
1,289,274 + BPHYT_RS05630 0.40 -0.5
1,289,274 + BPHYT_RS05630 0.40 -1.2
1,289,326 - BPHYT_RS05630 0.48 +0.7
1,289,419 - BPHYT_RS05630 0.61 -0.1
1,289,446 - BPHYT_RS05630 0.65 -0.3
1,289,477 - BPHYT_RS05630 0.69 -0.5
1,289,477 - BPHYT_RS05630 0.69 -0.5
1,289,562 - BPHYT_RS05630 0.81 +0.8
1,289,676 - -0.5
1,289,682 - -0.6
1,289,682 - +0.1
1,289,895 + -1.9
1,289,955 + BPHYT_RS05635 0.21 -1.5
1,289,973 + BPHYT_RS05635 0.28 -0.2
1,289,973 + BPHYT_RS05635 0.28 -0.0
1,289,973 + BPHYT_RS05635 0.28 +0.2
1,289,973 + BPHYT_RS05635 0.28 -1.1
1,290,107 + BPHYT_RS05635 0.79 -0.2
1,290,117 + BPHYT_RS05635 0.83 +0.6
1,290,117 + BPHYT_RS05635 0.83 -0.1
1,290,231 + -0.0
1,290,239 + +1.4
1,290,239 + -1.2
1,290,239 + -0.4
1,290,393 - BPHYT_RS05640 0.22 -0.5
1,290,403 + BPHYT_RS05640 0.23 -0.2
1,290,455 + BPHYT_RS05640 0.28 +0.1
1,290,466 - BPHYT_RS05640 0.29 -0.1
1,290,474 + BPHYT_RS05640 0.29 -0.1
1,290,475 - BPHYT_RS05640 0.30 +0.8
1,290,475 - BPHYT_RS05640 0.30 +2.4
1,290,546 - BPHYT_RS05640 0.36 +0.4
1,290,565 - BPHYT_RS05640 0.38 +0.8
1,290,584 + BPHYT_RS05640 0.40 -1.6
1,290,638 + BPHYT_RS05640 0.45 -1.8
1,290,639 - BPHYT_RS05640 0.45 +1.8
1,290,642 - BPHYT_RS05640 0.45 -2.6
1,290,682 + BPHYT_RS05640 0.49 -2.4
1,290,691 + BPHYT_RS05640 0.50 +0.5
1,291,069 + BPHYT_RS05640 0.85 -0.6
1,291,070 - BPHYT_RS05640 0.85 -1.5
1,291,070 - BPHYT_RS05640 0.85 -1.7
1,291,070 - BPHYT_RS05640 0.85 +0.0

Or see this region's nucleotide sequence