Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04015

Experiment: 36hr PHYTO6 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS04010 and BPHYT_RS04015 are separated by 55 nucleotidesBPHYT_RS04015 and BPHYT_RS04020 are separated by 31 nucleotidesBPHYT_RS04020 and BPHYT_RS04025 are separated by 185 nucleotides BPHYT_RS04010: BPHYT_RS04010 - glycosyl transferase, at 913,484 to 914,626 _RS04010 BPHYT_RS04015: BPHYT_RS04015 - glycosyl transferase, at 914,682 to 916,034 _RS04015 BPHYT_RS04020: BPHYT_RS04020 - hypothetical protein, at 916,066 to 916,572 _RS04020 BPHYT_RS04025: BPHYT_RS04025 - hypothetical protein, at 916,758 to 917,378 _RS04025 Position (kb) 914 915 916 917Strain fitness (log2 ratio) -1 0 1 2at 914.307 kb on - strand, within BPHYT_RS04010at 914.740 kb on - strandat 914.740 kb on - strandat 915.092 kb on + strand, within BPHYT_RS04015at 915.702 kb on + strand, within BPHYT_RS04015at 916.104 kb on - strandat 916.116 kb on - strandat 916.697 kb on + strandat 916.698 kb on - strandat 916.723 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1
remove
914,307 - BPHYT_RS04010 0.72 -0.6
914,740 - -0.5
914,740 - +0.4
915,092 + BPHYT_RS04015 0.30 +2.3
915,702 + BPHYT_RS04015 0.75 -0.9
916,104 - -1.1
916,116 - -0.3
916,697 + +1.3
916,698 - -0.4
916,723 + -0.2

Or see this region's nucleotide sequence