Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01250 and BPHYT_RS01255 are separated by 285 nucleotides BPHYT_RS01255 and BPHYT_RS01260 are separated by 215 nucleotides
BPHYT_RS01250: BPHYT_RS01250 - integrase, at 286,317 to 287,315
_RS01250
BPHYT_RS01255: BPHYT_RS01255 - AsnC family transcriptional regulator, at 287,601 to 288,062
_RS01255
BPHYT_RS01260: BPHYT_RS01260 - hypothetical protein, at 288,278 to 289,408
_RS01260
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 286.701 kb on + strand, within BPHYT_RS01250 at 286.702 kb on - strand, within BPHYT_RS01250 at 286.934 kb on + strand, within BPHYT_RS01250 at 286.935 kb on - strand, within BPHYT_RS01250 at 287.196 kb on - strand, within BPHYT_RS01250 at 287.228 kb on + strand at 287.228 kb on + strand at 287.229 kb on - strand at 287.229 kb on - strand at 287.533 kb on - strand at 287.652 kb on - strand, within BPHYT_RS01255 at 287.717 kb on - strand, within BPHYT_RS01255 at 287.717 kb on - strand, within BPHYT_RS01255 at 287.756 kb on - strand, within BPHYT_RS01255 at 287.852 kb on - strand, within BPHYT_RS01255 at 287.973 kb on + strand, within BPHYT_RS01255 at 288.074 kb on + strand at 288.075 kb on - strand at 288.142 kb on - strand at 288.142 kb on - strand at 288.175 kb on + strand at 288.301 kb on + strand at 288.301 kb on + strand at 288.301 kb on + strand at 288.302 kb on - strand at 288.360 kb on + strand at 288.398 kb on + strand, within BPHYT_RS01260 at 288.446 kb on + strand, within BPHYT_RS01260 at 288.569 kb on + strand, within BPHYT_RS01260 at 288.724 kb on - strand, within BPHYT_RS01260 at 288.725 kb on + strand, within BPHYT_RS01260 at 288.986 kb on + strand, within BPHYT_RS01260 at 288.987 kb on - strand, within BPHYT_RS01260 at 289.058 kb on + strand, within BPHYT_RS01260 at 289.059 kb on - strand, within BPHYT_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1 remove 286,701 + BPHYT_RS01250 0.38 +0.1 286,702 - BPHYT_RS01250 0.39 -0.1 286,934 + BPHYT_RS01250 0.62 +0.3 286,935 - BPHYT_RS01250 0.62 -0.4 287,196 - BPHYT_RS01250 0.88 -0.3 287,228 + +0.2 287,228 + +0.5 287,229 - +2.2 287,229 - +0.3 287,533 - -1.2 287,652 - BPHYT_RS01255 0.11 -0.4 287,717 - BPHYT_RS01255 0.25 +0.4 287,717 - BPHYT_RS01255 0.25 -0.2 287,756 - BPHYT_RS01255 0.34 -1.3 287,852 - BPHYT_RS01255 0.54 -0.6 287,973 + BPHYT_RS01255 0.81 -0.2 288,074 + -0.1 288,075 - -0.7 288,142 - -2.4 288,142 - -0.3 288,175 + +0.2 288,301 + -1.5 288,301 + +0.2 288,301 + -0.5 288,302 - +0.1 288,360 + +0.6 288,398 + BPHYT_RS01260 0.11 -0.3 288,446 + BPHYT_RS01260 0.15 +0.3 288,569 + BPHYT_RS01260 0.26 +0.5 288,724 - BPHYT_RS01260 0.39 +0.1 288,725 + BPHYT_RS01260 0.40 +1.0 288,986 + BPHYT_RS01260 0.63 -0.1 288,987 - BPHYT_RS01260 0.63 -0.1 289,058 + BPHYT_RS01260 0.69 +1.9 289,059 - BPHYT_RS01260 0.69 -0.9
Or see this region's nucleotide sequence