Experiment: 36hr PHYTO6 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00620 and BPHYT_RS00625 are separated by 672 nucleotides BPHYT_RS00625 and BPHYT_RS00630 overlap by 4 nucleotides
BPHYT_RS00620: BPHYT_RS00620 - hypothetical protein, at 147,730 to 148,308
_RS00620
BPHYT_RS00625: BPHYT_RS00625 - 3-oxoacyl-ACP synthase, at 148,981 to 149,907
_RS00625
BPHYT_RS00630: BPHYT_RS00630 - 3-oxoacyl-ACP synthase, at 149,904 to 150,965
_RS00630
Position (kb) 148
149
150 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 148.436 kb on + strand at 148.490 kb on + strand at 148.490 kb on + strand at 148.491 kb on - strand at 148.588 kb on - strand at 148.597 kb on + strand at 148.598 kb on - strand at 148.875 kb on + strand at 148.875 kb on + strand at 148.875 kb on + strand at 148.876 kb on - strand at 148.878 kb on + strand at 148.879 kb on - strand at 149.217 kb on + strand, within BPHYT_RS00625 at 149.233 kb on - strand, within BPHYT_RS00625 at 149.437 kb on + strand, within BPHYT_RS00625 at 149.437 kb on + strand, within BPHYT_RS00625 at 149.654 kb on - strand, within BPHYT_RS00625 at 149.654 kb on - strand, within BPHYT_RS00625 at 149.666 kb on + strand, within BPHYT_RS00625 at 149.667 kb on - strand, within BPHYT_RS00625 at 149.667 kb on - strand, within BPHYT_RS00625 at 149.697 kb on + strand, within BPHYT_RS00625 at 149.772 kb on - strand, within BPHYT_RS00625 at 149.772 kb on - strand, within BPHYT_RS00625 at 149.775 kb on + strand, within BPHYT_RS00625 at 149.775 kb on + strand, within BPHYT_RS00625 at 149.775 kb on + strand, within BPHYT_RS00625 at 149.775 kb on + strand, within BPHYT_RS00625 at 149.776 kb on - strand, within BPHYT_RS00625 at 149.776 kb on - strand, within BPHYT_RS00625 at 149.776 kb on - strand, within BPHYT_RS00625 at 149.776 kb on - strand, within BPHYT_RS00625 at 149.776 kb on - strand, within BPHYT_RS00625 at 149.777 kb on + strand, within BPHYT_RS00625 at 149.777 kb on + strand, within BPHYT_RS00625 at 149.777 kb on + strand, within BPHYT_RS00625 at 149.778 kb on - strand, within BPHYT_RS00625 at 149.778 kb on - strand, within BPHYT_RS00625 at 149.778 kb on - strand, within BPHYT_RS00625 at 149.887 kb on + strand at 150.060 kb on + strand, within BPHYT_RS00630 at 150.276 kb on - strand, within BPHYT_RS00630 at 150.450 kb on + strand, within BPHYT_RS00630 at 150.450 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.617 kb on + strand, within BPHYT_RS00630 at 150.618 kb on - strand, within BPHYT_RS00630 at 150.823 kb on + strand, within BPHYT_RS00630
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO6 MOI 1 remove 148,436 + +0.3 148,490 + -0.1 148,490 + +0.4 148,491 - +4.9 148,588 - +0.4 148,597 + +1.0 148,598 - -2.0 148,875 + -0.4 148,875 + +0.0 148,875 + -1.3 148,876 - -0.0 148,878 + +0.2 148,879 - -0.8 149,217 + BPHYT_RS00625 0.25 -1.1 149,233 - BPHYT_RS00625 0.27 -0.2 149,437 + BPHYT_RS00625 0.49 -0.2 149,437 + BPHYT_RS00625 0.49 +0.1 149,654 - BPHYT_RS00625 0.73 -0.5 149,654 - BPHYT_RS00625 0.73 +0.0 149,666 + BPHYT_RS00625 0.74 -0.4 149,667 - BPHYT_RS00625 0.74 -1.9 149,667 - BPHYT_RS00625 0.74 -0.3 149,697 + BPHYT_RS00625 0.77 -2.0 149,772 - BPHYT_RS00625 0.85 +0.2 149,772 - BPHYT_RS00625 0.85 +0.0 149,775 + BPHYT_RS00625 0.86 -0.5 149,775 + BPHYT_RS00625 0.86 +0.2 149,775 + BPHYT_RS00625 0.86 -1.3 149,775 + BPHYT_RS00625 0.86 +1.4 149,776 - BPHYT_RS00625 0.86 -1.3 149,776 - BPHYT_RS00625 0.86 -0.0 149,776 - BPHYT_RS00625 0.86 -0.4 149,776 - BPHYT_RS00625 0.86 -0.8 149,776 - BPHYT_RS00625 0.86 +1.4 149,777 + BPHYT_RS00625 0.86 -0.2 149,777 + BPHYT_RS00625 0.86 -1.0 149,777 + BPHYT_RS00625 0.86 -1.8 149,778 - BPHYT_RS00625 0.86 -0.5 149,778 - BPHYT_RS00625 0.86 -0.8 149,778 - BPHYT_RS00625 0.86 +0.3 149,887 + +0.1 150,060 + BPHYT_RS00630 0.15 +1.1 150,276 - BPHYT_RS00630 0.35 +1.5 150,450 + BPHYT_RS00630 0.51 -0.2 150,450 + BPHYT_RS00630 0.51 -0.0 150,617 + BPHYT_RS00630 0.67 -0.9 150,617 + BPHYT_RS00630 0.67 +0.4 150,617 + BPHYT_RS00630 0.67 +0.4 150,617 + BPHYT_RS00630 0.67 -0.2 150,617 + BPHYT_RS00630 0.67 +0.6 150,618 - BPHYT_RS00630 0.67 -0.3 150,823 + BPHYT_RS00630 0.87 -1.5
Or see this region's nucleotide sequence