Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS32355

Experiment: 36hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS32350 and BPHYT_RS32355 are separated by 14 nucleotidesBPHYT_RS32355 and BPHYT_RS32360 overlap by 14 nucleotides BPHYT_RS32350: BPHYT_RS32350 - ABC transporter permease, at 2,829,346 to 2,830,158 _RS32350 BPHYT_RS32355: BPHYT_RS32355 - ABC transporter permease, at 2,830,173 to 2,831,045 _RS32355 BPHYT_RS32360: BPHYT_RS32360 - spermidine/putrescine ABC transporter ATPase, at 2,831,032 to 2,832,120 _RS32360 Position (kb) 2830 2831 2832Strain fitness (log2 ratio) -1 0 1at 2829.288 kb on - strandat 2829.328 kb on + strandat 2830.113 kb on + strandat 2830.992 kb on + strandat 2831.339 kb on - strand, within BPHYT_RS32360

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
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2,829,288 - -0.6
2,829,328 + -0.7
2,830,113 + -0.2
2,830,992 + +0.6
2,831,339 - BPHYT_RS32360 0.28 -1.7

Or see this region's nucleotide sequence