Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27865
Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO10 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,812,909 | + | +0.0 | |||
1,813,079 | + | +0.6 | |||
1,813,298 | - | +0.0 | |||
1,813,537 | - | BPHYT_RS27860 | 0.48 | +0.2 | |
1,814,076 | - | -0.0 | |||
1,814,118 | - | -1.9 | |||
1,814,447 | + | BPHYT_RS27865 | 0.22 | -1.8 | |
1,814,448 | - | BPHYT_RS27865 | 0.22 | +0.0 | |
1,817,330 | + | BPHYT_RS27875 | 0.24 | -3.2 | |
1,817,331 | - | BPHYT_RS27875 | 0.24 | -1.1 | |
1,817,382 | - | BPHYT_RS27875 | 0.35 | -2.3 |
Or see this region's nucleotide sequence