Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27315

Experiment: 36hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27310 and BPHYT_RS27315 are separated by 67 nucleotides BPHYT_RS27310: BPHYT_RS27310 - LysR family transcriptional regulator, at 1,702,941 to 1,703,912 _RS27310 BPHYT_RS27315: BPHYT_RS27315 - DSBA oxidoreductase, at 1,703,980 to 1,704,633 _RS27315 Position (kb) 1703 1704 1705Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1703.838 kb on - strandat 1703.838 kb on - strandat 1704.101 kb on - strand, within BPHYT_RS27315at 1704.359 kb on - strand, within BPHYT_RS27315at 1704.359 kb on - strand, within BPHYT_RS27315at 1704.464 kb on + strand, within BPHYT_RS27315at 1704.864 kb on + strandat 1704.864 kb on + strandat 1704.864 kb on + strandat 1704.864 kb on + strandat 1704.865 kb on - strandat 1704.900 kb on + strandat 1704.901 kb on - strandat 1705.131 kb on + strandat 1705.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
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1,703,838 - -0.9
1,703,838 - -0.0
1,704,101 - BPHYT_RS27315 0.19 +0.2
1,704,359 - BPHYT_RS27315 0.58 +0.4
1,704,359 - BPHYT_RS27315 0.58 -1.7
1,704,464 + BPHYT_RS27315 0.74 -0.1
1,704,864 + -1.9
1,704,864 + -0.4
1,704,864 + +0.4
1,704,864 + -1.2
1,704,865 - +2.8
1,704,900 + -1.3
1,704,901 - +0.1
1,705,131 + +4.8
1,705,132 - +0.4

Or see this region's nucleotide sequence