Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26750
Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | 36hr PHYTO10 MOI 1 |
---|---|---|---|---|---|
remove | |||||
1,570,370 | + | +0.0 | |||
1,571,080 | + | BPHYT_RS26745 | 0.72 | -0.7 | |
1,572,005 | - | BPHYT_RS26750 | 0.82 | -1.6 | |
1,572,015 | + | BPHYT_RS26750 | 0.83 | -0.4 | |
1,572,243 | - | -2.2 | |||
1,572,243 | - | -0.7 | |||
1,572,243 | - | +0.4 | |||
1,572,300 | - | -1.6 | |||
1,572,300 | - | +0.0 | |||
1,572,380 | + | BPHYT_RS26755 | 0.15 | -1.3 | |
1,572,957 | - | BPHYT_RS26755 | 0.63 | -1.2 | |
1,572,962 | + | BPHYT_RS26755 | 0.63 | -0.4 | |
1,573,034 | - | BPHYT_RS26755 | 0.69 | -0.1 | |
1,573,053 | - | BPHYT_RS26755 | 0.71 | -1.2 |
Or see this region's nucleotide sequence