Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26180

Experiment: 36hr PHYTO10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS26170 and BPHYT_RS26175 are separated by 80 nucleotidesBPHYT_RS26175 and BPHYT_RS26180 are separated by 20 nucleotidesBPHYT_RS26180 and BPHYT_RS26185 are separated by 11 nucleotidesBPHYT_RS26185 and BPHYT_RS26190 are separated by 11 nucleotides BPHYT_RS26170: BPHYT_RS26170 - lipocalin, at 1,445,724 to 1,446,296 _RS26170 BPHYT_RS26175: BPHYT_RS26175 - XRE family transcriptional regulator, at 1,446,377 to 1,446,949 _RS26175 BPHYT_RS26180: BPHYT_RS26180 - acetyltransferase, at 1,446,970 to 1,447,506 _RS26180 BPHYT_RS26185: BPHYT_RS26185 - thioesterase, at 1,447,518 to 1,447,913 _RS26185 BPHYT_RS26190: BPHYT_RS26190 - lysine transporter LysE, at 1,447,925 to 1,448,557 _RS26190 Position (kb) 1446 1447 1448Strain fitness (log2 ratio) -3 -2 -1 0 1at 1446.000 kb on - strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.141 kb on + strand, within BPHYT_RS26170at 1446.144 kb on - strand, within BPHYT_RS26170at 1446.181 kb on + strand, within BPHYT_RS26170at 1446.182 kb on - strand, within BPHYT_RS26170at 1446.761 kb on + strand, within BPHYT_RS26175at 1447.492 kb on + strandat 1447.493 kb on - strandat 1447.502 kb on + strandat 1447.503 kb on - strandat 1447.503 kb on - strandat 1447.672 kb on + strand, within BPHYT_RS26185at 1448.166 kb on + strand, within BPHYT_RS26190at 1448.167 kb on - strand, within BPHYT_RS26190at 1448.301 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190at 1448.478 kb on + strand, within BPHYT_RS26190

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
remove
1,446,000 - BPHYT_RS26170 0.48 -1.2
1,446,141 + BPHYT_RS26170 0.73 -0.9
1,446,141 + BPHYT_RS26170 0.73 -0.5
1,446,141 + BPHYT_RS26170 0.73 -1.0
1,446,144 - BPHYT_RS26170 0.73 -0.7
1,446,181 + BPHYT_RS26170 0.80 -3.3
1,446,182 - BPHYT_RS26170 0.80 -1.0
1,446,761 + BPHYT_RS26175 0.67 +0.3
1,447,492 + -1.5
1,447,493 - -0.5
1,447,502 + +0.7
1,447,503 - +0.9
1,447,503 - -0.4
1,447,672 + BPHYT_RS26185 0.39 -2.8
1,448,166 + BPHYT_RS26190 0.38 +0.5
1,448,167 - BPHYT_RS26190 0.38 -2.4
1,448,301 + BPHYT_RS26190 0.59 +0.0
1,448,478 + BPHYT_RS26190 0.87 +0.8
1,448,478 + BPHYT_RS26190 0.87 -0.0

Or see this region's nucleotide sequence