Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25930

Experiment: 36hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25915 and BPHYT_RS25920 are separated by 41 nucleotidesBPHYT_RS25920 and BPHYT_RS25925 are separated by 66 nucleotidesBPHYT_RS25925 and BPHYT_RS25930 are separated by 139 nucleotidesBPHYT_RS25930 and BPHYT_RS25935 overlap by 4 nucleotides BPHYT_RS25915: BPHYT_RS25915 - secretion protein, at 1,391,909 to 1,392,448 _RS25915 BPHYT_RS25920: BPHYT_RS25920 - hypothetical protein, at 1,392,490 to 1,392,828 _RS25920 BPHYT_RS25925: BPHYT_RS25925 - hypothetical protein, at 1,392,895 to 1,393,092 _RS25925 BPHYT_RS25930: BPHYT_RS25930 - hypothetical protein, at 1,393,232 to 1,394,332 _RS25930 BPHYT_RS25935: BPHYT_RS25935 - type III secretion protein, at 1,394,329 to 1,396,242 _RS25935 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1394.624 kb on + strand, within BPHYT_RS25935at 1395.182 kb on - strand, within BPHYT_RS25935

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
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1,394,624 + BPHYT_RS25935 0.15 +3.8
1,395,182 - BPHYT_RS25935 0.45 -2.2

Or see this region's nucleotide sequence