Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24945

Experiment: 36hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24935 and BPHYT_RS24940 are separated by 97 nucleotidesBPHYT_RS24940 and BPHYT_RS24945 are separated by 321 nucleotidesBPHYT_RS24945 and BPHYT_RS24950 are separated by 96 nucleotidesBPHYT_RS24950 and BPHYT_RS24955 are separated by 111 nucleotides BPHYT_RS24935: BPHYT_RS24935 - cysteinyl-tRNA synthetase, at 1,165,995 to 1,167,383 _RS24935 BPHYT_RS24940: BPHYT_RS24940 - hypothetical protein, at 1,167,481 to 1,167,729 _RS24940 BPHYT_RS24945: BPHYT_RS24945 - alkylhydroperoxidase, at 1,168,051 to 1,168,443 _RS24945 BPHYT_RS24950: BPHYT_RS24950 - HAD family hydrolase, at 1,168,540 to 1,169,232 _RS24950 BPHYT_RS24955: BPHYT_RS24955 - cytochrome C peroxidase, at 1,169,344 to 1,170,786 _RS24955 Position (kb) 1168 1169Strain fitness (log2 ratio) -1 0 1at 1167.355 kb on + strandat 1167.356 kb on - strandat 1167.381 kb on + strandat 1167.845 kb on - strandat 1168.162 kb on + strand, within BPHYT_RS24945at 1168.163 kb on - strand, within BPHYT_RS24945at 1168.261 kb on + strand, within BPHYT_RS24945at 1168.262 kb on - strand, within BPHYT_RS24945

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
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1,167,355 + -0.3
1,167,356 - +0.2
1,167,381 + +0.2
1,167,845 - -1.2
1,168,162 + BPHYT_RS24945 0.28 +1.0
1,168,163 - BPHYT_RS24945 0.28 -1.0
1,168,261 + BPHYT_RS24945 0.53 -1.1
1,168,262 - BPHYT_RS24945 0.54 -0.8

Or see this region's nucleotide sequence