Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23720 and BPHYT_RS23725 are separated by 329 nucleotides BPHYT_RS23725 and BPHYT_RS23730 are separated by 261 nucleotides
BPHYT_RS23720: BPHYT_RS23720 - nH(3)-dependent NAD(+) synthetase, at 888,848 to 889,708
_RS23720
BPHYT_RS23725: BPHYT_RS23725 - hypothetical protein, at 890,038 to 891,024
_RS23725
BPHYT_RS23730: BPHYT_RS23730 - multidrug DMT transporter permease, at 891,286 to 892,158
_RS23730
Position (kb) 890
891
892 Strain fitness (log2 ratio) -1
0
1
2
3 at 889.071 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.143 kb on - strand, within BPHYT_RS23720 at 889.246 kb on - strand, within BPHYT_RS23720 at 889.276 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.314 kb on + strand, within BPHYT_RS23720 at 889.566 kb on + strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.567 kb on - strand, within BPHYT_RS23720 at 889.594 kb on - strand, within BPHYT_RS23720 at 889.804 kb on - strand at 889.823 kb on + strand at 889.824 kb on - strand at 889.878 kb on + strand at 889.882 kb on - strand at 889.927 kb on + strand at 889.985 kb on + strand at 889.986 kb on - strand at 890.038 kb on - strand at 890.342 kb on - strand, within BPHYT_RS23725 at 890.402 kb on - strand, within BPHYT_RS23725 at 890.449 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.524 kb on + strand, within BPHYT_RS23725 at 890.818 kb on + strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.840 kb on - strand, within BPHYT_RS23725 at 890.863 kb on - strand, within BPHYT_RS23725 at 891.371 kb on + strand at 891.372 kb on - strand at 891.932 kb on + strand, within BPHYT_RS23730 at 891.932 kb on + strand, within BPHYT_RS23730 at 891.959 kb on - strand, within BPHYT_RS23730
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 889,071 - BPHYT_RS23720 0.26 -0.0 889,143 - BPHYT_RS23720 0.34 +1.5 889,143 - BPHYT_RS23720 0.34 -0.7 889,143 - BPHYT_RS23720 0.34 -0.3 889,246 - BPHYT_RS23720 0.46 +0.1 889,276 + BPHYT_RS23720 0.50 -0.3 889,314 + BPHYT_RS23720 0.54 -0.3 889,314 + BPHYT_RS23720 0.54 -1.7 889,566 + BPHYT_RS23720 0.83 -0.5 889,567 - BPHYT_RS23720 0.84 +0.9 889,567 - BPHYT_RS23720 0.84 +0.2 889,594 - BPHYT_RS23720 0.87 +0.7 889,804 - +0.4 889,823 + +3.1 889,824 - -0.1 889,878 + +0.1 889,882 - -0.5 889,927 + -0.6 889,985 + +0.4 889,986 - +0.5 890,038 - -0.0 890,342 - BPHYT_RS23725 0.31 -1.3 890,402 - BPHYT_RS23725 0.37 +0.1 890,449 + BPHYT_RS23725 0.42 -0.3 890,524 + BPHYT_RS23725 0.49 -1.5 890,524 + BPHYT_RS23725 0.49 +0.0 890,818 + BPHYT_RS23725 0.79 -0.8 890,840 - BPHYT_RS23725 0.81 +0.8 890,840 - BPHYT_RS23725 0.81 -0.3 890,863 - BPHYT_RS23725 0.84 -1.3 891,371 + +0.4 891,372 - +0.2 891,932 + BPHYT_RS23730 0.74 -1.3 891,932 + BPHYT_RS23730 0.74 -1.7 891,959 - BPHYT_RS23730 0.77 -1.3
Or see this region's nucleotide sequence