Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23090

Experiment: 36hr PHYTO10 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS23085 and BPHYT_RS23090 are separated by 33 nucleotidesBPHYT_RS23090 and BPHYT_RS23095 are separated by 37 nucleotides BPHYT_RS23085: BPHYT_RS23085 - MFS transporter, at 743,089 to 744,501 _RS23085 BPHYT_RS23090: BPHYT_RS23090 - histidine kinase, at 744,535 to 745,089 _RS23090 BPHYT_RS23095: BPHYT_RS23095 - MFS transporter, at 745,127 to 746,359 _RS23095 Position (kb) 744 745 746Strain fitness (log2 ratio) -1 0 1 2at 743.555 kb on - strand, within BPHYT_RS23085at 743.847 kb on + strand, within BPHYT_RS23085at 743.924 kb on - strand, within BPHYT_RS23085at 744.029 kb on - strand, within BPHYT_RS23085at 744.202 kb on + strand, within BPHYT_RS23085at 744.203 kb on - strand, within BPHYT_RS23085at 744.209 kb on - strand, within BPHYT_RS23085at 744.915 kb on - strand, within BPHYT_RS23090at 745.221 kb on - strandat 745.221 kb on - strandat 745.508 kb on + strand, within BPHYT_RS23095at 745.634 kb on + strand, within BPHYT_RS23095at 745.868 kb on + strand, within BPHYT_RS23095at 745.929 kb on - strand, within BPHYT_RS23095

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
remove
743,555 - BPHYT_RS23085 0.33 +0.9
743,847 + BPHYT_RS23085 0.54 +2.6
743,924 - BPHYT_RS23085 0.59 -1.4
744,029 - BPHYT_RS23085 0.67 -0.1
744,202 + BPHYT_RS23085 0.79 -0.2
744,203 - BPHYT_RS23085 0.79 +0.8
744,209 - BPHYT_RS23085 0.79 -0.8
744,915 - BPHYT_RS23090 0.68 -1.2
745,221 - +1.5
745,221 - -0.3
745,508 + BPHYT_RS23095 0.31 -0.2
745,634 + BPHYT_RS23095 0.41 +0.2
745,868 + BPHYT_RS23095 0.60 -0.3
745,929 - BPHYT_RS23095 0.65 +0.1

Or see this region's nucleotide sequence