Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19260

Experiment: 36hr PHYTO10 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	36hr PHYTO10 MOI 1
4,322,470	+				+0.1
4,322,471	-				-1.6
4,322,721	+				+0.4
4,322,874	-				+0.6
4,322,977	+		BPHYT_RS19255	0.11	-0.6
4,322,978	-		BPHYT_RS19255	0.11	-2.3
4,322,988	+		BPHYT_RS19255	0.15	+0.5
4,322,998	+		BPHYT_RS19255	0.19	-0.4
4,323,040	+		BPHYT_RS19255	0.34	-0.6
4,323,040	+		BPHYT_RS19255	0.34	+0.7
4,323,040	+		BPHYT_RS19255	0.34	-0.5
4,323,083	-		BPHYT_RS19255	0.49	-1.6
4,323,086	+		BPHYT_RS19255	0.50	-1.0
4,323,147	-		BPHYT_RS19255	0.72	-1.1
4,323,239	+				+0.2
4,323,239	+				-0.9
4,323,240	-				+1.6
4,323,374	+				+0.6
4,323,408	+				+0.2
4,323,409	-				-0.2
4,323,409	-				-1.3
4,323,425	+				+0.1
4,323,426	-				-1.4
4,323,905	+				+0.1
4,323,906	-		BPHYT_RS19260	0.87	-1.1
4,324,042	+				+0.7
4,324,043	-				-0.2
4,324,043	-				-0.0
4,324,044	+				-1.2
4,324,044	+				-1.0
4,324,044	+				+1.1
4,324,044	+				+0.1
4,324,044	+				-0.2
4,324,045	-				+0.3
4,324,045	-				-0.3
4,324,045	-				+1.4
4,324,045	-				-0.3
4,324,045	-				+0.4
4,324,045	-				-1.1
4,324,049	-				-0.9
4,324,049	-				+0.6
4,324,205	+				-0.2
4,324,318	+				-1.3
4,324,376	+				+0.4
4,324,474	+				-1.0
4,324,543	-				-0.3
4,324,575	-				-0.0
4,324,575	-				-1.0
4,324,603	+		BPHYT_RS19265	0.18	-1.0
4,324,791	-				+0.4
4,324,791	-				+0.5
4,324,889	-		BPHYT_RS19270	0.43	-0.4
4,324,889	-		BPHYT_RS19270	0.43	-0.9
4,324,943	+		BPHYT_RS19270	0.61	-0.4