Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS18385 and BPHYT_RS18390 are separated by 203 nucleotides
BPHYT_RS18385: BPHYT_RS18385 - 4-hydroxyphenylpyruvate dioxygenase, at 4,134,513 to 4,135,265
_RS18385
BPHYT_RS18390: BPHYT_RS18390 - membrane protein, at 4,135,469 to 4,136,401
_RS18390
Position (kb) 4135
4136
4137 Strain fitness (log2 ratio) -2
-1
0
1 at 4134.478 kb on - strand at 4134.488 kb on + strand at 4134.489 kb on - strand at 4134.489 kb on - strand at 4134.505 kb on - strand at 4134.571 kb on - strand at 4134.703 kb on + strand, within BPHYT_RS18385 at 4134.703 kb on + strand, within BPHYT_RS18385 at 4134.757 kb on + strand, within BPHYT_RS18385 at 4134.757 kb on + strand, within BPHYT_RS18385 at 4134.758 kb on - strand, within BPHYT_RS18385 at 4134.758 kb on - strand, within BPHYT_RS18385 at 4134.928 kb on + strand, within BPHYT_RS18385 at 4135.039 kb on + strand, within BPHYT_RS18385 at 4135.039 kb on + strand, within BPHYT_RS18385 at 4135.338 kb on - strand at 4135.818 kb on + strand, within BPHYT_RS18390 at 4135.907 kb on + strand, within BPHYT_RS18390 at 4135.907 kb on + strand, within BPHYT_RS18390 at 4135.908 kb on - strand, within BPHYT_RS18390 at 4135.908 kb on - strand, within BPHYT_RS18390 at 4135.944 kb on - strand, within BPHYT_RS18390 at 4136.016 kb on + strand, within BPHYT_RS18390 at 4136.076 kb on + strand, within BPHYT_RS18390 at 4136.145 kb on - strand, within BPHYT_RS18390 at 4136.145 kb on - strand at 4136.175 kb on - strand, within BPHYT_RS18390 at 4136.340 kb on + strand at 4136.341 kb on - strand at 4136.341 kb on - strand at 4136.341 kb on - strand at 4136.341 kb on - strand at 4136.524 kb on + strand at 4136.622 kb on + strand at 4136.622 kb on + strand at 4136.622 kb on + strand at 4136.623 kb on - strand at 4136.698 kb on + strand at 4136.699 kb on - strand at 4136.874 kb on + strand at 4136.874 kb on + strand at 4136.875 kb on - strand at 4136.967 kb on + strand at 4136.968 kb on - strand at 4136.985 kb on + strand at 4137.028 kb on - strand at 4137.031 kb on + strand at 4137.031 kb on + strand at 4137.072 kb on + strand at 4137.072 kb on + strand at 4137.104 kb on + strand at 4137.104 kb on + strand at 4137.189 kb on - strand at 4137.253 kb on + strand at 4137.308 kb on + strand at 4137.340 kb on + strand at 4137.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 4,134,478 - -0.4 4,134,488 + +0.4 4,134,489 - +0.1 4,134,489 - +0.1 4,134,505 - -0.7 4,134,571 - +0.1 4,134,703 + BPHYT_RS18385 0.25 +0.0 4,134,703 + BPHYT_RS18385 0.25 -0.4 4,134,757 + BPHYT_RS18385 0.32 +0.5 4,134,757 + BPHYT_RS18385 0.32 -0.8 4,134,758 - BPHYT_RS18385 0.33 +1.1 4,134,758 - BPHYT_RS18385 0.33 +0.8 4,134,928 + BPHYT_RS18385 0.55 +0.3 4,135,039 + BPHYT_RS18385 0.70 +1.0 4,135,039 + BPHYT_RS18385 0.70 +0.4 4,135,338 - +0.2 4,135,818 + BPHYT_RS18390 0.37 -2.2 4,135,907 + BPHYT_RS18390 0.47 +1.5 4,135,907 + BPHYT_RS18390 0.47 -1.0 4,135,908 - BPHYT_RS18390 0.47 -1.7 4,135,908 - BPHYT_RS18390 0.47 -0.2 4,135,944 - BPHYT_RS18390 0.51 -0.1 4,136,016 + BPHYT_RS18390 0.59 +1.1 4,136,076 + BPHYT_RS18390 0.65 +1.6 4,136,145 - BPHYT_RS18390 0.72 +0.3 4,136,145 - +1.1 4,136,175 - BPHYT_RS18390 0.76 -0.1 4,136,340 + -0.1 4,136,341 - -0.1 4,136,341 - -0.4 4,136,341 - +0.2 4,136,341 - +0.3 4,136,524 + +1.5 4,136,622 + +0.4 4,136,622 + -1.1 4,136,622 + -0.1 4,136,623 - +0.3 4,136,698 + +0.2 4,136,699 - +0.1 4,136,874 + +0.6 4,136,874 + +0.2 4,136,875 - -0.4 4,136,967 + +1.3 4,136,968 - +0.3 4,136,985 + +0.1 4,137,028 - +0.6 4,137,031 + +0.5 4,137,031 + -1.1 4,137,072 + +0.0 4,137,072 + -0.5 4,137,104 + +0.3 4,137,104 + -0.8 4,137,189 - +0.5 4,137,253 + -0.4 4,137,308 + +1.4 4,137,340 + +0.5 4,137,398 + -0.3
Or see this region's nucleotide sequence