Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS08280

Experiment: 36hr PHYTO10 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS08275 and BPHYT_RS08280 are separated by 159 nucleotidesBPHYT_RS08280 and BPHYT_RS08285 are separated by 2 nucleotides BPHYT_RS08275: BPHYT_RS08275 - acetyl-CoA acetyltransferase, at 1,890,164 to 1,891,465 _RS08275 BPHYT_RS08280: BPHYT_RS08280 - acyl dehydratase, at 1,891,625 to 1,892,569 _RS08280 BPHYT_RS08285: BPHYT_RS08285 - 3-ketoacyl-ACP reductase, at 1,892,572 to 1,893,990 _RS08285 Position (kb) 1891 1892 1893Strain fitness (log2 ratio) -2 -1 0 1at 1890.856 kb on - strand, within BPHYT_RS08275at 1891.200 kb on + strand, within BPHYT_RS08275at 1891.201 kb on - strand, within BPHYT_RS08275at 1891.324 kb on - strand, within BPHYT_RS08275at 1891.498 kb on - strandat 1892.289 kb on + strand, within BPHYT_RS08280at 1892.405 kb on + strand, within BPHYT_RS08280at 1892.405 kb on + strand, within BPHYT_RS08280at 1892.455 kb on - strand, within BPHYT_RS08280

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1
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1,890,856 - BPHYT_RS08275 0.53 -0.3
1,891,200 + BPHYT_RS08275 0.80 -1.1
1,891,201 - BPHYT_RS08275 0.80 -0.8
1,891,324 - BPHYT_RS08275 0.89 -0.0
1,891,498 - -0.4
1,892,289 + BPHYT_RS08280 0.70 +0.0
1,892,405 + BPHYT_RS08280 0.83 -0.3
1,892,405 + BPHYT_RS08280 0.83 -1.8
1,892,455 - BPHYT_RS08280 0.88 -0.7

Or see this region's nucleotide sequence