Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS05790 and BPHYT_RS05795 are separated by 46 nucleotides BPHYT_RS05795 and BPHYT_RS05800 are separated by 107 nucleotides BPHYT_RS05800 and BPHYT_RS05805 are separated by 33 nucleotides
BPHYT_RS05790: BPHYT_RS05790 - hypothetical protein, at 1,316,362 to 1,317,291
_RS05790
BPHYT_RS05795: BPHYT_RS05795 - hypothetical protein, at 1,317,338 to 1,317,700
_RS05795
BPHYT_RS05800: BPHYT_RS05800 - hypothetical protein, at 1,317,808 to 1,318,089
_RS05800
BPHYT_RS05805: BPHYT_RS05805 - prophage tail length tape measure, at 1,318,123 to 1,323,246
_RS05805
Position (kb) 1317
1318
1319 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1316.834 kb on - strand, within BPHYT_RS05790 at 1316.990 kb on - strand, within BPHYT_RS05790 at 1316.990 kb on - strand, within BPHYT_RS05790 at 1317.397 kb on + strand, within BPHYT_RS05795 at 1317.652 kb on - strand, within BPHYT_RS05795 at 1317.662 kb on + strand, within BPHYT_RS05795 at 1317.663 kb on - strand, within BPHYT_RS05795 at 1317.908 kb on - strand, within BPHYT_RS05800 at 1317.944 kb on - strand, within BPHYT_RS05800 at 1317.958 kb on + strand, within BPHYT_RS05800 at 1318.144 kb on - strand at 1318.144 kb on - strand at 1318.146 kb on + strand at 1318.147 kb on - strand at 1318.497 kb on + strand at 1318.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 1,316,834 - BPHYT_RS05790 0.51 -0.1 1,316,990 - BPHYT_RS05790 0.68 -0.4 1,316,990 - BPHYT_RS05790 0.68 -0.7 1,317,397 + BPHYT_RS05795 0.16 +0.2 1,317,652 - BPHYT_RS05795 0.87 +0.0 1,317,662 + BPHYT_RS05795 0.89 +2.6 1,317,663 - BPHYT_RS05795 0.90 +1.4 1,317,908 - BPHYT_RS05800 0.35 -1.9 1,317,944 - BPHYT_RS05800 0.48 +0.7 1,317,958 + BPHYT_RS05800 0.53 -0.8 1,318,144 - -0.1 1,318,144 - +1.0 1,318,146 + +3.1 1,318,147 - -0.2 1,318,497 + -1.1 1,318,498 - +0.5
Or see this region's nucleotide sequence