Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01620 and BPHYT_RS01625 overlap by 4 nucleotides BPHYT_RS01625 and BPHYT_RS01630 are separated by 143 nucleotides
BPHYT_RS01620: BPHYT_RS01620 - sensor histidine kinase, at 368,130 to 369,440
_RS01620
BPHYT_RS01625: BPHYT_RS01625 - chemotaxis protein CheY, at 369,437 to 369,979
_RS01625
BPHYT_RS01630: BPHYT_RS01630 - ATP-dependent protease ATPase subunit HslU, at 370,123 to 371,469
_RS01630
Position (kb) 369
370 Strain fitness (log2 ratio) -2
-1
0
1
2 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.439 kb on + strand, within BPHYT_RS01620 at 368.584 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.672 kb on - strand, within BPHYT_RS01620 at 368.784 kb on - strand, within BPHYT_RS01620 at 368.847 kb on + strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.848 kb on - strand, within BPHYT_RS01620 at 368.849 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.891 kb on + strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620 at 368.892 kb on - strand, within BPHYT_RS01620 at 369.053 kb on + strand, within BPHYT_RS01620 at 369.172 kb on + strand, within BPHYT_RS01620 at 369.172 kb on + strand, within BPHYT_RS01620 at 369.173 kb on - strand, within BPHYT_RS01620 at 369.173 kb on - strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.239 kb on + strand, within BPHYT_RS01620 at 369.240 kb on - strand, within BPHYT_RS01620 at 369.267 kb on + strand, within BPHYT_RS01620 at 369.359 kb on + strand at 369.737 kb on + strand, within BPHYT_RS01625 at 369.737 kb on + strand, within BPHYT_RS01625 at 369.865 kb on + strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.866 kb on - strand, within BPHYT_RS01625 at 369.977 kb on + strand at 369.977 kb on + strand at 369.978 kb on - strand at 370.016 kb on - strand at 370.268 kb on + strand, within BPHYT_RS01630 at 370.392 kb on - strand, within BPHYT_RS01630
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 368,439 + BPHYT_RS01620 0.24 +1.5 368,439 + BPHYT_RS01620 0.24 +1.8 368,439 + BPHYT_RS01620 0.24 +1.2 368,439 + BPHYT_RS01620 0.24 +2.6 368,439 + BPHYT_RS01620 0.24 +0.8 368,584 - BPHYT_RS01620 0.35 -1.7 368,672 - BPHYT_RS01620 0.41 -0.2 368,672 - BPHYT_RS01620 0.41 -1.1 368,672 - BPHYT_RS01620 0.41 +2.7 368,784 - BPHYT_RS01620 0.50 +0.0 368,847 + BPHYT_RS01620 0.55 +1.0 368,848 - BPHYT_RS01620 0.55 -0.7 368,848 - BPHYT_RS01620 0.55 +0.0 368,848 - BPHYT_RS01620 0.55 -1.4 368,849 + BPHYT_RS01620 0.55 +0.2 368,891 + BPHYT_RS01620 0.58 +0.4 368,891 + BPHYT_RS01620 0.58 +1.2 368,892 - BPHYT_RS01620 0.58 -1.5 368,892 - BPHYT_RS01620 0.58 -2.1 369,053 + BPHYT_RS01620 0.70 +1.6 369,172 + BPHYT_RS01620 0.79 +0.8 369,172 + BPHYT_RS01620 0.79 +0.7 369,173 - BPHYT_RS01620 0.80 -1.2 369,173 - BPHYT_RS01620 0.80 -1.7 369,239 + BPHYT_RS01620 0.85 -0.3 369,239 + BPHYT_RS01620 0.85 +0.4 369,239 + BPHYT_RS01620 0.85 +1.6 369,240 - BPHYT_RS01620 0.85 +2.1 369,267 + BPHYT_RS01620 0.87 +1.5 369,359 + +0.8 369,737 + BPHYT_RS01625 0.55 -1.8 369,737 + BPHYT_RS01625 0.55 -1.5 369,865 + BPHYT_RS01625 0.79 +0.1 369,866 - BPHYT_RS01625 0.79 +0.3 369,866 - BPHYT_RS01625 0.79 -0.1 369,866 - BPHYT_RS01625 0.79 -0.2 369,977 + +0.5 369,977 + +0.0 369,978 - +1.1 370,016 - +0.3 370,268 + BPHYT_RS01630 0.11 +1.1 370,392 - BPHYT_RS01630 0.20 -0.7
Or see this region's nucleotide sequence