Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01200 and BPHYT_RS01205 are separated by 21 nucleotides BPHYT_RS01205 and BPHYT_RS01210 are separated by 32 nucleotides BPHYT_RS01210 and BPHYT_RS01215 are separated by 253 nucleotides
BPHYT_RS01200: BPHYT_RS01200 - hypothetical protein, at 277,162 to 279,012
_RS01200
BPHYT_RS01205: BPHYT_RS01205 - hypothetical protein, at 279,034 to 279,222
_RS01205
BPHYT_RS01210: BPHYT_RS01210 - hypothetical protein, at 279,255 to 280,337
_RS01210
BPHYT_RS01215: BPHYT_RS01215 - hypothetical protein, at 280,591 to 281,583
_RS01215
Position (kb) 279
280
281 Strain fitness (log2 ratio) -1
0
1
2
3 at 278.281 kb on + strand, within BPHYT_RS01200 at 278.282 kb on - strand, within BPHYT_RS01200 at 278.296 kb on + strand, within BPHYT_RS01200 at 278.345 kb on - strand, within BPHYT_RS01200 at 278.377 kb on + strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.378 kb on - strand, within BPHYT_RS01200 at 278.608 kb on + strand, within BPHYT_RS01200 at 278.609 kb on - strand, within BPHYT_RS01200 at 279.034 kb on - strand at 279.169 kb on + strand, within BPHYT_RS01205 at 279.362 kb on + strand at 279.363 kb on - strand at 279.387 kb on + strand, within BPHYT_RS01210 at 279.407 kb on + strand, within BPHYT_RS01210 at 279.687 kb on - strand, within BPHYT_RS01210 at 279.687 kb on - strand, within BPHYT_RS01210 at 280.080 kb on - strand, within BPHYT_RS01210 at 280.336 kb on - strand at 280.357 kb on + strand at 280.358 kb on - strand at 280.358 kb on - strand at 280.359 kb on + strand at 280.360 kb on - strand at 280.360 kb on - strand at 280.360 kb on - strand at 280.416 kb on + strand at 280.692 kb on + strand, within BPHYT_RS01215 at 280.845 kb on + strand, within BPHYT_RS01215 at 280.846 kb on - strand, within BPHYT_RS01215 at 280.849 kb on + strand, within BPHYT_RS01215 at 280.849 kb on + strand, within BPHYT_RS01215 at 280.850 kb on - strand, within BPHYT_RS01215 at 280.867 kb on + strand, within BPHYT_RS01215 at 281.195 kb on + strand, within BPHYT_RS01215 at 281.195 kb on + strand, within BPHYT_RS01215 at 281.196 kb on - strand, within BPHYT_RS01215 at 281.196 kb on - strand, within BPHYT_RS01215 at 281.197 kb on + strand, within BPHYT_RS01215 at 281.269 kb on + strand, within BPHYT_RS01215 at 281.270 kb on - strand, within BPHYT_RS01215
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 278,281 + BPHYT_RS01200 0.60 -0.1 278,282 - BPHYT_RS01200 0.61 -0.0 278,296 + BPHYT_RS01200 0.61 -0.3 278,345 - BPHYT_RS01200 0.64 -0.6 278,377 + BPHYT_RS01200 0.66 -0.2 278,378 - BPHYT_RS01200 0.66 +1.0 278,378 - BPHYT_RS01200 0.66 +0.2 278,378 - BPHYT_RS01200 0.66 -0.2 278,608 + BPHYT_RS01200 0.78 -0.8 278,609 - BPHYT_RS01200 0.78 +0.5 279,034 - -0.4 279,169 + BPHYT_RS01205 0.71 -0.8 279,362 + -0.4 279,363 - +1.4 279,387 + BPHYT_RS01210 0.12 -0.2 279,407 + BPHYT_RS01210 0.14 -0.6 279,687 - BPHYT_RS01210 0.40 -1.6 279,687 - BPHYT_RS01210 0.40 +0.5 280,080 - BPHYT_RS01210 0.76 -0.7 280,336 - -0.5 280,357 + -0.8 280,358 - +0.3 280,358 - +0.6 280,359 + +0.1 280,360 - -1.3 280,360 - +0.2 280,360 - -0.6 280,416 + +0.5 280,692 + BPHYT_RS01215 0.10 +3.3 280,845 + BPHYT_RS01215 0.26 -0.1 280,846 - BPHYT_RS01215 0.26 -0.1 280,849 + BPHYT_RS01215 0.26 +0.7 280,849 + BPHYT_RS01215 0.26 -0.2 280,850 - BPHYT_RS01215 0.26 -1.0 280,867 + BPHYT_RS01215 0.28 -0.7 281,195 + BPHYT_RS01215 0.61 +1.9 281,195 + BPHYT_RS01215 0.61 -0.2 281,196 - BPHYT_RS01215 0.61 -0.9 281,196 - BPHYT_RS01215 0.61 +0.3 281,197 + BPHYT_RS01215 0.61 -1.5 281,269 + BPHYT_RS01215 0.68 +0.3 281,270 - BPHYT_RS01215 0.68 -0.8
Or see this region's nucleotide sequence