Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01190 and BPHYT_RS01195 are separated by 800 nucleotides BPHYT_RS01195 and BPHYT_RS01200 are separated by 52 nucleotides
BPHYT_RS01190: BPHYT_RS01190 - hypothetical protein, at 273,598 to 274,338
_RS01190
BPHYT_RS01195: BPHYT_RS01195 - hypothetical protein, at 275,139 to 277,109
_RS01195
BPHYT_RS01200: BPHYT_RS01200 - hypothetical protein, at 277,162 to 279,012
_RS01200
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -1
0
1
2 at 274.376 kb on - strand at 274.573 kb on + strand at 274.659 kb on - strand at 274.671 kb on - strand at 274.672 kb on + strand at 274.702 kb on - strand at 274.835 kb on + strand at 274.836 kb on - strand at 274.887 kb on - strand at 274.943 kb on + strand at 275.272 kb on - strand at 275.276 kb on + strand at 275.277 kb on - strand at 275.277 kb on - strand at 275.304 kb on + strand at 275.411 kb on + strand, within BPHYT_RS01195 at 275.411 kb on + strand, within BPHYT_RS01195 at 275.412 kb on - strand, within BPHYT_RS01195 at 275.463 kb on + strand, within BPHYT_RS01195 at 275.623 kb on - strand, within BPHYT_RS01195 at 275.886 kb on - strand, within BPHYT_RS01195 at 275.928 kb on + strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.008 kb on + strand, within BPHYT_RS01195 at 276.122 kb on + strand, within BPHYT_RS01195 at 276.211 kb on - strand, within BPHYT_RS01195 at 276.440 kb on + strand, within BPHYT_RS01195 at 276.567 kb on + strand, within BPHYT_RS01195 at 276.576 kb on + strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.856 kb on - strand, within BPHYT_RS01195 at 277.009 kb on + strand at 277.009 kb on + strand at 277.071 kb on - strand at 277.090 kb on + strand at 277.135 kb on + strand at 277.136 kb on - strand at 277.150 kb on - strand at 277.186 kb on - strand at 277.195 kb on + strand at 277.199 kb on - strand at 277.199 kb on - strand at 277.266 kb on + strand at 277.267 kb on - strand at 277.366 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.409 kb on - strand, within BPHYT_RS01200 at 277.594 kb on + strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.754 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 278.037 kb on - strand, within BPHYT_RS01200 at 278.080 kb on + strand, within BPHYT_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 274,376 - +0.1 274,573 + +0.6 274,659 - +0.1 274,671 - -0.6 274,672 + +0.4 274,702 - +0.8 274,835 + -0.2 274,836 - +2.1 274,887 - -0.0 274,943 + +0.5 275,272 - -1.0 275,276 + -0.0 275,277 - -0.0 275,277 - -0.0 275,304 + -1.0 275,411 + BPHYT_RS01195 0.14 -0.1 275,411 + BPHYT_RS01195 0.14 +0.1 275,412 - BPHYT_RS01195 0.14 +0.0 275,463 + BPHYT_RS01195 0.16 -0.3 275,623 - BPHYT_RS01195 0.25 -0.1 275,886 - BPHYT_RS01195 0.38 -1.1 275,928 + BPHYT_RS01195 0.40 -0.1 276,005 - BPHYT_RS01195 0.44 -0.2 276,005 - BPHYT_RS01195 0.44 -0.0 276,005 - BPHYT_RS01195 0.44 -0.6 276,005 - BPHYT_RS01195 0.44 +0.3 276,008 + BPHYT_RS01195 0.44 -0.0 276,122 + BPHYT_RS01195 0.50 -0.2 276,211 - BPHYT_RS01195 0.54 -1.6 276,440 + BPHYT_RS01195 0.66 +0.0 276,567 + BPHYT_RS01195 0.72 +0.7 276,576 + BPHYT_RS01195 0.73 -0.5 276,577 - BPHYT_RS01195 0.73 -0.5 276,577 - BPHYT_RS01195 0.73 -0.4 276,856 - BPHYT_RS01195 0.87 -0.6 277,009 + +1.0 277,009 + +0.1 277,071 - -0.2 277,090 + +0.4 277,135 + +0.5 277,136 - +0.5 277,150 - -0.3 277,186 - -1.7 277,195 + -0.7 277,199 - +1.0 277,199 - -0.7 277,266 + -0.1 277,267 - +2.1 277,366 + BPHYT_RS01200 0.11 +0.1 277,408 + BPHYT_RS01200 0.13 -0.6 277,408 + BPHYT_RS01200 0.13 +0.0 277,409 - BPHYT_RS01200 0.13 +0.3 277,594 + BPHYT_RS01200 0.23 -0.4 277,751 - BPHYT_RS01200 0.32 +0.8 277,751 - BPHYT_RS01200 0.32 +0.1 277,754 - BPHYT_RS01200 0.32 +0.5 277,808 - BPHYT_RS01200 0.35 -0.5 277,808 - BPHYT_RS01200 0.35 -0.1 277,892 - BPHYT_RS01200 0.39 +0.1 277,892 - BPHYT_RS01200 0.39 +0.4 278,037 - BPHYT_RS01200 0.47 +1.4 278,080 + BPHYT_RS01200 0.50 -0.0
Or see this region's nucleotide sequence