Experiment: 36hr PHYTO10 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00160 and BPHYT_RS00165 are separated by 131 nucleotides BPHYT_RS00165 and BPHYT_RS00170 are separated by 22 nucleotides
BPHYT_RS00160: BPHYT_RS00160 - ABC transporter substrate-binding protein, at 43,261 to 44,049
_RS00160
BPHYT_RS00165: BPHYT_RS00165 - AraC family transcriptional regulator, at 44,181 to 45,026
_RS00165
BPHYT_RS00170: BPHYT_RS00170 - lysine transporter LysE, at 45,049 to 45,636
_RS00170
Position (kb) 44
45
46 Strain fitness (log2 ratio) -2
-1
0
1 at 43.185 kb on + strand at 43.185 kb on + strand at 43.185 kb on + strand at 43.456 kb on - strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 43.768 kb on + strand, within BPHYT_RS00160 at 44.047 kb on + strand at 44.048 kb on - strand at 44.048 kb on - strand at 44.059 kb on + strand at 44.059 kb on + strand at 44.129 kb on + strand at 44.130 kb on - strand at 44.133 kb on + strand at 44.155 kb on + strand at 44.163 kb on + strand at 44.178 kb on + strand at 44.302 kb on - strand, within BPHYT_RS00165 at 44.362 kb on - strand, within BPHYT_RS00165 at 44.847 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.868 kb on + strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 44.893 kb on - strand, within BPHYT_RS00165 at 45.016 kb on - strand at 45.065 kb on + strand at 45.200 kb on + strand, within BPHYT_RS00170 at 45.201 kb on - strand, within BPHYT_RS00170 at 45.315 kb on - strand, within BPHYT_RS00170 at 45.380 kb on + strand, within BPHYT_RS00170 at 45.390 kb on - strand, within BPHYT_RS00170 at 45.571 kb on - strand at 45.571 kb on - strand, within BPHYT_RS00170 at 45.625 kb on + strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.626 kb on - strand at 45.650 kb on - strand at 45.706 kb on - strand at 45.706 kb on - strand at 45.855 kb on - strand at 45.995 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 1 remove 43,185 + -0.9 43,185 + +0.0 43,185 + -0.1 43,456 - BPHYT_RS00160 0.25 -0.1 43,768 + BPHYT_RS00160 0.64 +0.0 43,768 + BPHYT_RS00160 0.64 +1.1 44,047 + -1.4 44,048 - -0.9 44,048 - -0.1 44,059 + -0.3 44,059 + -1.1 44,129 + -0.9 44,130 - +0.1 44,133 + -2.3 44,155 + -1.8 44,163 + +0.4 44,178 + -0.7 44,302 - BPHYT_RS00165 0.14 -0.2 44,362 - BPHYT_RS00165 0.21 +0.5 44,847 + BPHYT_RS00165 0.79 -0.2 44,868 + BPHYT_RS00165 0.81 -0.7 44,868 + BPHYT_RS00165 0.81 -2.3 44,893 - BPHYT_RS00165 0.84 -0.7 44,893 - BPHYT_RS00165 0.84 -1.5 45,016 - -0.7 45,065 + +0.2 45,200 + BPHYT_RS00170 0.26 +0.2 45,201 - BPHYT_RS00170 0.26 -0.7 45,315 - BPHYT_RS00170 0.45 +0.2 45,380 + BPHYT_RS00170 0.56 -0.3 45,390 - BPHYT_RS00170 0.58 +0.8 45,571 - -0.2 45,571 - BPHYT_RS00170 0.89 +0.2 45,625 + -0.4 45,626 - -0.3 45,626 - +0.3 45,626 - -0.6 45,650 - +0.6 45,706 - -1.7 45,706 - +0.6 45,855 - -0.2 45,995 + -0.0
Or see this region's nucleotide sequence