Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36070

Experiment: 36hr PHYTO10 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36050 and BPHYT_RS36055 are separated by 8 nucleotidesBPHYT_RS36055 and BPHYT_RS36060 are separated by 9 nucleotidesBPHYT_RS36060 and BPHYT_RS36065 are separated by 7 nucleotidesBPHYT_RS36065 and BPHYT_RS36070 overlap by 1 nucleotidesBPHYT_RS36070 and BPHYT_RS36075 are separated by 294 nucleotides BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393 _RS36050 BPHYT_RS36055: BPHYT_RS36055 - hypothetical protein, at 37,402 to 37,695 _RS36055 BPHYT_RS36060: BPHYT_RS36060 - hypothetical protein, at 37,705 to 38,094 _RS36060 BPHYT_RS36065: BPHYT_RS36065 - hypothetical protein, at 38,102 to 38,296 _RS36065 BPHYT_RS36070: BPHYT_RS36070 - hypothetical protein, at 38,296 to 38,571 _RS36070 BPHYT_RS36075: BPHYT_RS36075 - hypothetical protein, at 38,866 to 40,434 _RS36075 Position (kb) 38 39Strain fitness (log2 ratio) -2 -1 0 1at 37.393 kb on + strandat 37.393 kb on + strandat 37.394 kb on - strandat 37.437 kb on + strand, within BPHYT_RS36055at 37.695 kb on + strandat 37.865 kb on + strand, within BPHYT_RS36060at 38.051 kb on + strand, within BPHYT_RS36060at 38.098 kb on - strandat 39.429 kb on + strand, within BPHYT_RS36075at 39.440 kb on + strand, within BPHYT_RS36075

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Per-strain Table

Position Strand Gene LocusTag Fraction 36hr PHYTO10 MOI 10
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37,393 + +1.0
37,393 + -2.1
37,394 - +1.0
37,437 + BPHYT_RS36055 0.12 -1.8
37,695 + +0.0
37,865 + BPHYT_RS36060 0.41 -0.5
38,051 + BPHYT_RS36060 0.89 -0.0
38,098 - +0.6
39,429 + BPHYT_RS36075 0.36 -0.8
39,440 + BPHYT_RS36075 0.37 -1.0

Or see this region's nucleotide sequence